Analysis of interatomic Contacts of Structural Units in PDB entry:
9YVV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9YVV entry

There is 1 chain in PDB entry 9YVV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 20SER 491
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 9YVV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
30 39Right-handed alpha
Helix 2
AA2
A
41 54Right-handed alpha
Helix 3
AA3
A
71 80Right-handed alpha
Helix 4
AA4
A
92 96Right-handed 310
Helix 5
AA5
A
99 107Right-handed 310
Helix 6
AA6
A
108 128Right-handed alpha
Helix 7
AA7
A
130 153Right-handed alpha
Helix 8
AA8
A
160 178Right-handed alpha
Helix 9
AA9
A
182 188Right-handed alpha
Helix 10
AB1
A
193 195Right-handed 310
Helix 11
AB2
A
196 210Right-handed alpha
Helix 12
AB3
A
211 249Right-handed alpha
Helix 13
AB4
A
258 269Right-handed alpha
Helix 14
AB5
A
271 279Right-handed alpha
Helix 15
AB6
A
281 286Right-handed alpha
Helix 16
AB7
A
286 315Right-handed alpha
Helix 17
AB8
A
315 330Right-handed alpha
Helix 18
AB9
A
337 343Right-handed 310
Helix 19
AC1
A
344 358Right-handed alpha
Helix 20
AC2
A
390 396Right-handed alpha
Helix 21
AC3
A
408 413Right-handed 310
Helix 22
AC4
A
420 425Right-handed alpha
Helix 23
AC5
A
439 457Right-handed alpha
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There are 5 sheets in PDB entry 9YVV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 26first strand
Strand 2
A
56 59parallel
Strand 3
A
66 69anti-parallel
Strand 4
A
387 389parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 89first strand
Strand 2
A
368 369anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
374 376first strand
Strand 2
A
379 381anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
458 461first strand
Strand 2
A
486 489anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
472 473first strand
Strand 2
A
479 480anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il