Analysis of interatomic Contacts of Structural Units in PDB entry:
9YW2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9YW2 entry

There are 3 chains in PDB entry 9YW2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 14ASP 204
H
 HIS 529GLU 650
I
 GLY 230LYS 239
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 9YW2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
43 50Right-handed alpha
Helix 2
AA2
A
85 92Right-handed alpha
Helix 3
AA3
A
119 124Right-handed alpha
Helix 4
AA4
A
129 134Right-handed alpha
Helix 5
AA5
A
134 140Right-handed alpha
Helix 6
AA6
A
190 197Right-handed alpha
Helix 7
AA7
H
530 557Right-handed alpha
Helix 8
AA8
H
558 561Right-handed 310
Helix 9
AA9
H
596 605Right-handed alpha
Helix 10
AB1
H
623 627Right-handed 310
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There are 4 sheets in PDB entry 9YW2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 30first strand
Strand 2
A
81 84parallel
Strand 3
A
38 42anti-parallel
Strand 4
A
66 74parallel
Strand 5
A
56 60anti-parallel
Strand 6
A
99 104anti-parallel
Strand 7
A
25 30anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 154first strand
Strand 2
A
161 168anti-parallel
Strand 3
A
113 118anti-parallel
Strand 4
A
181 183parallel
Strand 5
I
233 234anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 147first strand
Strand 2
A
173 175anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
587 591first strand
Strand 2
H
573 579anti-parallel
Strand 3
H
641 648parallel
Strand 4
H
613 616anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il