Analysis of interatomic Contacts of Structural Units in PDB entry:
9YWQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9YWQ entry

There is 1 chain in PDB entry 9YWQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 12GLN 1343
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 9YWQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 41Right-handed alpha
Helix 2
AA2
A
66 82Right-handed alpha
Helix 3
AA3
A
98 122Right-handed alpha
Helix 4
AA4
A
122 139Right-handed alpha
Helix 5
AA5
A
178 182Right-handed 310
Helix 6
AA6
A
204 207Right-handed 310
Helix 7
AA7
A
249 260Right-handed alpha
Helix 8
AA8
A
267 283Right-handed alpha
Helix 9
AA9
A
284 301Right-handed alpha
Helix 10
AB1
A
309 314Right-handed alpha
Helix 11
AB2
A
315 323Right-handed alpha
Helix 12
AB3
A
324 326Right-handed 310
Helix 13
AB4
A
329 347Right-handed alpha
Helix 14
AB5
A
377 391Right-handed alpha
Helix 15
AB6
A
402 408Right-handed alpha
Helix 16
AB7
A
838 851Right-handed alpha
Helix 17
AB8
A
864 871Right-handed alpha
Helix 18
AB9
A
872 874Right-handed 310
Helix 19
AC1
A
961 969Right-handed alpha
Helix 20
AC2
A
971 975Right-handed 310
Helix 21
AC3
A
983 996Right-handed alpha
Helix 22
AC4
A
1009 1011Right-handed 310
Helix 23
AC5
A
1012 1017Right-handed alpha
Helix 24
AC6
A
1054 1064Right-handed alpha
Helix 25
AC7
A
1078 1117Right-handed alpha
Helix 26
AC8
A
1124 1134Right-handed alpha
Helix 27
AC9
A
1134 1143Right-handed alpha
Helix 28
AD1
A
1165 1180Right-handed alpha
Helix 29
AD2
A
1180 1205Right-handed alpha
Helix 30
AD3
A
1229 1256Right-handed alpha
Helix 31
AD4
A
1266 1269Right-handed 310
Helix 32
AD5
A
1270 1295Right-handed alpha
Helix 33
AD6
A
1305 1309Right-handed 310
Helix 34
AD7
A
1310 1340Right-handed alpha
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There are 3 sheets in PDB entry 9YWQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 170first strand
Strand 2
A
173 175anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 189first strand
Strand 2
A
242 245anti-parallel
Strand 3
A
200 202anti-parallel
Strand 4
A
210 211anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
883 884first strand
Strand 2
A
978 980parallel
Strand 3
A
854 858parallel
Strand 4
A
412 415parallel
Strand 5
A
1001 1006parallel
Strand 6
A
1021 1025parallel
Strand 7
A
1069 1071parallel
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