Analysis of interatomic Contacts of Structural Units in PDB entry:
9YXM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9YXM entry

There are 3 chains in PDB entry 9YXM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 10GLU 877
B
 A 6 A 44
C
 T 8 T 30
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 9YXM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 28Right-handed alpha
Helix 2
AA2
A
29 45Right-handed alpha
Helix 3
AA3
A
48 54Right-handed 310
Helix 4
AA4
A
77 90Right-handed alpha
Helix 5
AA5
A
105 109Right-handed 310
Helix 6
AA6
A
110 125Right-handed alpha
Helix 7
AA7
A
133 151Right-handed alpha
Helix 8
AA8
A
151 165Right-handed alpha
Helix 9
AA9
A
192 196Right-handed 310
Helix 10
AB1
A
205 224Right-handed alpha
Helix 11
AB2
A
247 257Right-handed alpha
Helix 12
AB3
A
305 309Right-handed 310
Helix 13
AB4
A
313 325Right-handed alpha
Helix 14
AB5
A
331 339Right-handed alpha
Helix 15
AB6
A
382 408Right-handed alpha
Helix 16
AB7
A
437 443Right-handed alpha
Helix 17
AB8
A
453 468Right-handed alpha
Helix 18
AB9
A
474 485Right-handed alpha
Helix 19
AC1
A
485 495Right-handed alpha
Helix 20
AC2
A
501 505Right-handed 310
Helix 21
AC3
A
507 525Right-handed alpha
Helix 22
AC4
A
552 559Right-handed alpha
Helix 23
AC5
A
569 588Right-handed alpha
Helix 24
AC6
A
612 624Right-handed alpha
Helix 25
AC7
A
628 638Right-handed alpha
Helix 26
AC8
A
643 654Right-handed alpha
Helix 27
AC9
A
654 662Right-handed alpha
Helix 28
AD1
A
663 667Right-handed 310
Helix 29
AD2
A
669 688Right-handed alpha
Helix 30
AD3
A
691 708Right-handed alpha
Helix 31
AD4
A
750 754Right-handed 310
Helix 32
AD5
A
771 801Right-handed alpha
Helix 33
AD6
A
820 836Right-handed alpha
Helix 34
AD7
A
840 853Right-handed alpha
Helix 35
AD8
A
854 860Right-handed alpha
Helix 36
AD9
A
871 876Right-handed alpha
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There are 6 sheets in PDB entry 9YXM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
227 230first strand
Strand 2
A
243 246anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
329 330first strand
Strand 2
A
444 445anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
419 420first strand
Strand 2
A
426 427anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
450 451first strand
Strand 2
A
529 530anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
726 727first strand
Strand 2
A
735 736anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
744 746first strand
Strand 2
A
760 762anti-parallel
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