Analysis of interatomic Contacts of Structural Units in PDB entry:
9YYD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9YYD entry

There is 1 chain in PDB entry 9YYD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 22PHE 1366
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 9YYD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
28 54Right-handed alpha
Helix 2
AA2
A
56 64Right-handed alpha
Helix 3
AA3
A
76 92Right-handed alpha
Helix 4
AA4
A
103 131Right-handed alpha
Helix 5
AA5
A
132 151Right-handed alpha
Helix 6
AA6
A
158 162Right-handed 310
Helix 7
AA7
A
190 192Right-handed 310
Helix 8
AA8
A
259 270Right-handed alpha
Helix 9
AA9
A
277 292Right-handed alpha
Helix 10
AB1
A
294 313Right-handed alpha
Helix 11
AB2
A
319 325Right-handed alpha
Helix 12
AB3
A
325 333Right-handed alpha
Helix 13
AB4
A
339 358Right-handed alpha
Helix 14
AB5
A
384 401Right-handed alpha
Helix 15
AB6
A
412 418Right-handed alpha
Helix 16
AB7
A
582 589Right-handed 310
Helix 17
AB8
A
591 603Right-handed alpha
Helix 18
AB9
A
605 607Right-handed 310
Helix 19
AC1
A
608 626Right-handed alpha
Helix 20
AC2
A
640 648Right-handed alpha
Helix 21
AC3
A
650 654Right-handed 310
Helix 22
AC4
A
715 720Right-handed alpha
Helix 23
AC5
A
736 753Right-handed alpha
Helix 24
AC6
A
844 857Right-handed alpha
Helix 25
AC7
A
868 880Right-handed alpha
Helix 26
AC8
A
964 966Right-handed 310
Helix 27
AC9
A
967 975Right-handed alpha
Helix 28
AD1
A
977 981Right-handed 310
Helix 29
AD2
A
989 1003Right-handed alpha
Helix 30
AD3
A
1015 1017Right-handed 310
Helix 31
AD4
A
1018 1025Right-handed alpha
Helix 32
AD5
A
1053 1058Right-handed alpha
Helix 33
AD6
A
1060 1070Right-handed alpha
Helix 34
AD7
A
1081 1083Right-handed 310
Helix 35
AD8
A
1084 1123Right-handed alpha
Helix 36
AD9
A
1130 1140Right-handed alpha
Helix 37
AE1
A
1140 1149Right-handed alpha
Helix 38
AE2
A
1171 1211Right-handed alpha
Helix 39
AE3
A
1235 1260Right-handed alpha
Helix 40
AE4
A
1272 1275Right-handed 310
Helix 41
AE5
A
1276 1301Right-handed alpha
Helix 42
AE6
A
1311 1315Right-handed 310
Helix 43
AE7
A
1316 1358Right-handed alpha
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There are 5 sheets in PDB entry 9YYD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 180first strand
Strand 2
A
183 188anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
197 200first strand
Strand 2
A
251 255anti-parallel
Strand 3
A
210 212anti-parallel
Strand 4
A
220 221anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
888 890first strand
Strand 2
A
984 986parallel
Strand 3
A
860 864parallel
Strand 4
A
422 425parallel
Strand 5
A
1007 1012parallel
Strand 6
A
1027 1031parallel
Strand 7
A
1075 1077parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
452 454first strand
Strand 2
A
438 443anti-parallel
Strand 3
A
831 840anti-parallel
Strand 4
A
723 727parallel
Strand 5
A
732 734anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
452 454first strand
Strand 2
A
438 443anti-parallel
Strand 3
A
831 840anti-parallel
Strand 4
A
755 762anti-parallel
Strand 5
A
709 714anti-parallel
Strand 6
A
693 702anti-parallel
Strand 7
A
657 667anti-parallel
Strand 8
A
775 779parallel
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