Analysis of interatomic Contacts of Structural Units in PDB entry:
9YYH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9YYH entry

There are 5 chains in PDB entry 9YYH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 377
B
 G -115 C 12
C
 C -7 T 0
D
 G -12 G 7
E
 C 31 C 34
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 9YYH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 46Right-handed alpha
Helix 2
AA2
A
51 65Right-handed alpha
Helix 3
AA3
A
70 74Right-handed 310
Helix 4
AA4
A
75 100Right-handed alpha
Helix 5
AA5
A
213 218Right-handed alpha
Helix 6
AA6
A
218 231Right-handed alpha
Helix 7
AA7
A
236 272Right-handed alpha
Helix 8
AA8
A
281 286Right-handed alpha
Helix 9
AA9
A
291 299Right-handed alpha
Helix 10
AB1
A
299 314Right-handed alpha
Helix 11
AB2
A
338 343Right-handed 310
Helix 12
AB3
A
359 377Right-handed alpha
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There are 2 sheets in PDB entry 9YYH. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
117 121first strand
Strand 2
A
153 160anti-parallel
Strand 3
A
167 176anti-parallel
Strand 4
A
2 12anti-parallel
Strand 5
A
140 145anti-parallel
Strand 6
A
133 136anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
207 210first strand
Strand 2
A
196 201anti-parallel
Strand 3
A
187 192anti-parallel
Strand 4
A
274 276parallel
Strand 5
A
317 319parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il