Analysis of interatomic Contacts of Structural Units in PDB entry:
9YYS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9YYS entry

There are 6 chains in PDB entry 9YYS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 2	ALA 285
B	THR 2	ALA 285
C	THR 2	ALA 285
D	THR 2	ALA 285
E	THR 2	ALA 285
F	THR 2	ARG 39

There are 53 helices in PDB entry 9YYS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	48	52	Right-handed 310
Helix 2	AA2	A	68	73	Right-handed 310
Helix 3	AA3	A	74	86	Right-handed alpha
Helix 4	AA4	A	118	128	Right-handed alpha
Helix 5	AA5	A	139	143	Right-handed 310
Helix 6	AA6	A	148	152	Right-handed 310
Helix 7	AA7	A	194	200	Right-handed 310
Helix 8	AA8	A	223	241	Right-handed alpha
Helix 9	AA9	A	265	283	Right-handed alpha
Helix 10	AB1	B	48	52	Right-handed 310
Helix 11	AB2	B	68	73	Right-handed 310
Helix 12	AB3	B	74	86	Right-handed alpha
Helix 13	AB4	B	118	128	Right-handed alpha
Helix 14	AB5	B	139	143	Right-handed 310
Helix 15	AB6	B	148	152	Right-handed 310
Helix 16	AB7	B	194	199	Right-handed 310
Helix 17	AB8	B	223	241	Right-handed alpha
Helix 18	AB9	B	265	283	Right-handed alpha
Helix 19	AC1	C	48	52	Right-handed 310
Helix 20	AC2	C	68	73	Right-handed 310
Helix 21	AC3	C	74	86	Right-handed alpha
Helix 22	AC4	C	118	128	Right-handed alpha
Helix 23	AC5	C	139	143	Right-handed 310
Helix 24	AC6	C	148	152	Right-handed 310
Helix 25	AC7	C	223	241	Right-handed alpha
Helix 26	AC8	C	265	283	Right-handed alpha
Helix 27	AC9	D	48	52	Right-handed 310
Helix 28	AD1	D	68	73	Right-handed 310
Helix 29	AD2	D	74	86	Right-handed alpha
Helix 30	AD3	D	118	128	Right-handed alpha
Helix 31	AD4	D	139	143	Right-handed 310
Helix 32	AD5	D	148	152	Right-handed 310
Helix 33	AD6	D	194	200	Right-handed 310
Helix 34	AD7	D	223	241	Right-handed alpha
Helix 35	AD8	D	265	283	Right-handed alpha
Helix 36	AD9	E	48	52	Right-handed 310
Helix 37	AE1	E	68	73	Right-handed 310
Helix 38	AE2	E	74	86	Right-handed alpha
Helix 39	AE3	E	118	128	Right-handed alpha
Helix 40	AE4	E	139	143	Right-handed 310
Helix 41	AE5	E	148	152	Right-handed 310
Helix 42	AE6	E	194	199	Right-handed 310
Helix 43	AE7	E	223	241	Right-handed alpha
Helix 44	AE8	E	265	283	Right-handed alpha
Helix 45	AE9	F	48	52	Right-handed 310
Helix 46	AF1	F	68	73	Right-handed 310
Helix 47	AF2	F	74	86	Right-handed alpha
Helix 48	AF3	F	118	128	Right-handed alpha
Helix 49	AF4	F	139	143	Right-handed 310
Helix 50	AF5	F	148	152	Right-handed 310
Helix 51	AF6	F	194	199	Right-handed 310
Helix 52	AF7	F	223	241	Right-handed alpha
Helix 53	AF8	F	265	283	Right-handed alpha

There are 30 sheets in PDB entry 9YYS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	16	first strand
Strand 2	A	21	27	anti-parallel
Strand 3	A	62	66	anti-parallel
Strand 4	A	100	104	parallel
Strand 5	A	45	46	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	33	39	first strand
Strand 2	A	252	262	anti-parallel
Strand 3	A	212	220	parallel
Strand 4	A	171	179	anti-parallel
Strand 5	A	160	168	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	92	first strand
Strand 2	A	95	97	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	146	147	first strand
Strand 2	A	157	158	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	184	185	first strand
Strand 2	A	242	243	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	16	first strand
Strand 2	B	21	27	anti-parallel
Strand 3	B	62	66	anti-parallel
Strand 4	B	100	104	parallel
Strand 5	B	45	46	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	33	39	first strand
Strand 2	B	252	262	anti-parallel
Strand 3	B	212	220	parallel
Strand 4	B	171	179	anti-parallel
Strand 5	B	160	168	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	92	first strand
Strand 2	B	95	97	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	147	first strand
Strand 2	B	157	158	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	184	185	first strand
Strand 2	B	242	243	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	16	first strand
Strand 2	C	21	27	anti-parallel
Strand 3	C	62	66	anti-parallel
Strand 4	C	100	104	parallel
Strand 5	C	45	46	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	33	39	first strand
Strand 2	C	252	262	anti-parallel
Strand 3	C	212	220	parallel
Strand 4	C	171	179	anti-parallel
Strand 5	C	160	168	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	90	92	first strand
Strand 2	C	95	97	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	146	147	first strand
Strand 2	C	157	158	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	184	185	first strand
Strand 2	C	242	243	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	16	first strand
Strand 2	D	21	27	anti-parallel
Strand 3	D	62	66	anti-parallel
Strand 4	D	100	104	parallel
Strand 5	D	45	46	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	33	39	first strand
Strand 2	D	252	262	anti-parallel
Strand 3	D	212	220	parallel
Strand 4	D	171	179	anti-parallel
Strand 5	D	160	168	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	90	92	first strand
Strand 2	D	95	97	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	146	147	first strand
Strand 2	D	157	158	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	184	185	first strand
Strand 2	D	242	243	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	16	first strand
Strand 2	E	21	27	anti-parallel
Strand 3	E	62	66	anti-parallel
Strand 4	E	100	104	parallel
Strand 5	E	45	46	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	33	39	first strand
Strand 2	E	252	262	anti-parallel
Strand 3	E	212	220	parallel
Strand 4	E	171	179	anti-parallel
Strand 5	E	160	168	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	90	92	first strand
Strand 2	E	95	97	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	146	147	first strand
Strand 2	E	157	158	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	184	185	first strand
Strand 2	E	242	243	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	16	first strand
Strand 2	F	21	27	anti-parallel
Strand 3	F	62	66	anti-parallel
Strand 4	F	100	104	parallel
Strand 5	F	45	46	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	33	39	first strand
Strand 2	F	252	262	anti-parallel
Strand 3	F	212	220	parallel
Strand 4	F	171	179	anti-parallel
Strand 5	F	160	168	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	90	92	first strand
Strand 2	F	95	97	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	146	147	first strand
Strand 2	F	157	158	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	184	185	first strand
Strand 2	F	242	243	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9YYS

Analysis of interatomic Contacts of Structural Units in PDB entry:
9YYS