Analysis of interatomic Contacts of Structural Units in PDB entry:
9YYU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9YYU entry

There are 9 chains in PDB entry 9YYU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 795	GLY 971
H	VAL 2	SER 122
L	ASP 1	ILE 107
B	LYS 795	GLY 971
I	VAL 2	SER 122
M	ASP 1	ILE 107
C	LYS 795	GLY 971
J	VAL 2	SER 122
N	ASP 1	ILE 107

There are 27 helices in PDB entry 9YYU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	813	823	Right-handed alpha
Helix 2	AA2	A	832	842	Right-handed alpha
Helix 3	AA3	A	844	848	Right-handed 310
Helix 4	AA4	A	866	887	Right-handed alpha
Helix 5	AA5	A	887	894	Right-handed alpha
Helix 6	AA6	A	895	971	Right-handed alpha
Helix 7	AA7	H	28	32	Right-handed 310
Helix 8	AA8	H	87	91	Right-handed 310
Helix 9	AA9	H	101	105	Right-handed 310
Helix 10	AB1	B	813	823	Right-handed alpha
Helix 11	AB2	B	832	842	Right-handed alpha
Helix 12	AB3	B	844	848	Right-handed 310
Helix 13	AB4	B	866	887	Right-handed alpha
Helix 14	AB5	B	887	894	Right-handed alpha
Helix 15	AB6	B	895	971	Right-handed alpha
Helix 16	AB7	I	28	32	Right-handed 310
Helix 17	AB8	I	87	91	Right-handed 310
Helix 18	AB9	I	101	105	Right-handed 310
Helix 19	AC1	C	813	823	Right-handed alpha
Helix 20	AC2	C	832	842	Right-handed alpha
Helix 21	AC3	C	844	848	Right-handed 310
Helix 22	AC4	C	866	887	Right-handed alpha
Helix 23	AC5	C	887	894	Right-handed alpha
Helix 24	AC6	C	895	971	Right-handed alpha
Helix 25	AC7	J	28	32	Right-handed 310
Helix 26	AC8	J	87	91	Right-handed 310
Helix 27	AC9	J	101	105	Right-handed 310

There are 21 sheets in PDB entry 9YYU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	853	855	first strand
Strand 2	A	858	860	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	19	25	anti-parallel
Strand 3	H	78	82	anti-parallel
Strand 4	H	69	73	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	117	121	parallel
Strand 3	H	92	99	anti-parallel
Strand 4	H	34	40	anti-parallel
Strand 5	H	44	51	anti-parallel
Strand 6	H	58	59	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	117	121	parallel
Strand 3	H	92	99	anti-parallel
Strand 4	H	110	112	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	5	7	first strand
Strand 2	L	19	24	anti-parallel
Strand 3	L	70	75	anti-parallel
Strand 4	L	62	67	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	12	first strand
Strand 2	L	103	106	parallel
Strand 3	L	85	90	anti-parallel
Strand 4	L	33	38	anti-parallel
Strand 5	L	45	49	anti-parallel
Strand 6	L	53	54	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	12	first strand
Strand 2	L	103	106	parallel
Strand 3	L	85	90	anti-parallel
Strand 4	L	98	99	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	853	855	first strand
Strand 2	B	858	860	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	3	7	first strand
Strand 2	I	19	25	anti-parallel
Strand 3	I	78	82	anti-parallel
Strand 4	I	69	73	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	11	12	first strand
Strand 2	I	117	121	parallel
Strand 3	I	92	99	anti-parallel
Strand 4	I	34	40	anti-parallel
Strand 5	I	44	51	anti-parallel
Strand 6	I	58	59	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	11	12	first strand
Strand 2	I	117	121	parallel
Strand 3	I	92	99	anti-parallel
Strand 4	I	110	112	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	5	7	first strand
Strand 2	M	19	24	anti-parallel
Strand 3	M	70	75	anti-parallel
Strand 4	M	62	67	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	10	12	first strand
Strand 2	M	103	106	parallel
Strand 3	M	85	90	anti-parallel
Strand 4	M	33	38	anti-parallel
Strand 5	M	45	49	anti-parallel
Strand 6	M	53	54	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	10	12	first strand
Strand 2	M	103	106	parallel
Strand 3	M	85	90	anti-parallel
Strand 4	M	98	99	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	853	855	first strand
Strand 2	C	858	860	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	3	7	first strand
Strand 2	J	19	25	anti-parallel
Strand 3	J	78	82	anti-parallel
Strand 4	J	69	73	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	11	12	first strand
Strand 2	J	117	121	parallel
Strand 3	J	92	99	anti-parallel
Strand 4	J	34	40	anti-parallel
Strand 5	J	44	51	anti-parallel
Strand 6	J	58	59	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	11	12	first strand
Strand 2	J	117	121	parallel
Strand 3	J	92	99	anti-parallel
Strand 4	J	110	112	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	5	7	first strand
Strand 2	N	19	24	anti-parallel
Strand 3	N	70	75	anti-parallel
Strand 4	N	62	67	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	10	12	first strand
Strand 2	N	103	106	parallel
Strand 3	N	85	90	anti-parallel
Strand 4	N	33	38	anti-parallel
Strand 5	N	45	49	anti-parallel
Strand 6	N	53	54	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	10	12	first strand
Strand 2	N	103	106	parallel
Strand 3	N	85	90	anti-parallel
Strand 4	N	98	99	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9YYU

Analysis of interatomic Contacts of Structural Units in PDB entry:
9YYU