Analysis of interatomic Contacts of Structural Units in PDB entry:
9YYV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9YYV entry

There are 3 chains in PDB entry 9YYV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 702	GLY 1124
B	GLU 702	GLY 1124
C	GLU 702	GLY 1124

There are 18 helices in PDB entry 9YYV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	702	708	Right-handed 310
Helix 2	AA2	A	737	744	Right-handed alpha
Helix 3	AA3	A	746	754	Right-handed alpha
Helix 4	AA4	A	755	757	Right-handed 310
Helix 5	AA5	A	758	769	Right-handed alpha
Helix 6	AA6	A	944	1033	Right-handed alpha
Helix 7	AA7	B	702	708	Right-handed 310
Helix 8	AA8	B	737	744	Right-handed alpha
Helix 9	AA9	B	746	754	Right-handed alpha
Helix 10	AB1	B	755	757	Right-handed 310
Helix 11	AB2	B	758	769	Right-handed alpha
Helix 12	AB3	B	944	1033	Right-handed alpha
Helix 13	AB4	C	702	708	Right-handed 310
Helix 14	AB5	C	737	744	Right-handed alpha
Helix 15	AB6	C	746	754	Right-handed alpha
Helix 16	AB7	C	755	757	Right-handed 310
Helix 17	AB8	C	758	769	Right-handed alpha
Helix 18	AB9	C	944	1033	Right-handed alpha

There are 12 sheets in PDB entry 9YYV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	713	718	first strand
Strand 2	A	1069	1074	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	721	728	first strand
Strand 2	A	1059	1067	anti-parallel
Strand 3	A	1047	1056	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1087	1090	first strand
Strand 2	A	1120	1123	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1094	1097	first strand
Strand 2	A	1102	1105	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	713	718	first strand
Strand 2	B	1069	1074	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	721	728	first strand
Strand 2	B	1059	1067	anti-parallel
Strand 3	B	1047	1056	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1087	1090	first strand
Strand 2	B	1120	1123	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1094	1097	first strand
Strand 2	B	1102	1105	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	713	718	first strand
Strand 2	C	1069	1074	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	721	728	first strand
Strand 2	C	1059	1067	anti-parallel
Strand 3	C	1047	1056	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1087	1090	first strand
Strand 2	C	1120	1123	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1094	1097	first strand
Strand 2	C	1102	1105	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9YYV

Analysis of interatomic Contacts of Structural Units in PDB entry:
9YYV