Analysis of interatomic Contacts of Structural Units in PDB entry:
9YZ4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9YZ4 entry

There are 3 chains in PDB entry 9YZ4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
F	ASP 3	ARG 677
A	LYS 46	PHE 915
B	GLY 23	GLN 712

There are 54 helices in PDB entry 9YZ4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	F	11	30	Right-handed alpha
Helix 2	AA2	F	44	54	Right-handed alpha
Helix 3	AA3	F	63	65	Right-handed 310
Helix 4	AA4	F	66	72	Right-handed alpha
Helix 5	AA5	F	108	112	Right-handed 310
Helix 6	AA6	F	129	136	Right-handed alpha
Helix 7	AA7	F	145	154	Right-handed alpha
Helix 8	AA8	F	167	172	Right-handed 310
Helix 9	AA9	F	186	197	Right-handed alpha
Helix 10	AB1	F	208	214	Right-handed alpha
Helix 11	AB2	F	216	222	Right-handed alpha
Helix 12	AB3	F	237	241	Right-handed 310
Helix 13	AB4	F	259	275	Right-handed alpha
Helix 14	AB5	F	310	316	Right-handed alpha
Helix 15	AB6	F	316	329	Right-handed alpha
Helix 16	AB7	F	348	361	Right-handed alpha
Helix 17	AB8	F	373	383	Right-handed alpha
Helix 18	AB9	F	392	402	Right-handed alpha
Helix 19	AC1	F	417	421	Right-handed 310
Helix 20	AC2	F	460	471	Right-handed alpha
Helix 21	AC3	F	475	480	Right-handed alpha
Helix 22	AC4	F	501	505	Right-handed 310
Helix 23	AC5	F	516	527	Right-handed alpha
Helix 24	AC6	F	536	541	Right-handed alpha
Helix 25	AC7	F	548	552	Right-handed 310
Helix 26	AC8	F	555	557	Right-handed 310
Helix 27	AC9	F	572	574	Right-handed 310
Helix 28	AD1	F	593	605	Right-handed alpha
Helix 29	AD2	F	646	652	Right-handed alpha
Helix 30	AD3	F	652	663	Right-handed alpha
Helix 31	AD4	F	668	675	Right-handed alpha
Helix 32	AD5	A	65	72	Right-handed alpha
Helix 33	AD6	A	75	79	Right-handed 310
Helix 34	AD7	A	105	109	Right-handed 310
Helix 35	AD8	A	144	146	Right-handed 310
Helix 36	AD9	A	158	163	Right-handed alpha
Helix 37	AE1	A	177	181	Right-handed 310
Helix 38	AE2	A	233	238	Right-handed 310
Helix 39	AE3	A	268	273	Right-handed alpha
Helix 40	AE4	A	350	362	Right-handed alpha
Helix 41	AE5	A	374	378	Right-handed 310
Helix 42	AE6	A	384	386	Right-handed 310
Helix 43	AE7	A	531	535	Right-handed 310
Helix 44	AE8	A	652	658	Right-handed alpha
Helix 45	AE9	A	744	748	Right-handed alpha
Helix 46	AF1	A	818	820	Right-handed 310
Helix 47	AF2	A	828	830	Right-handed 310
Helix 48	AF3	A	876	882	Right-handed alpha
Helix 49	AF4	A	896	901	Right-handed 310
Helix 50	AF5	B	84	88	Right-handed 310
Helix 51	AF6	B	101	111	Right-handed alpha
Helix 52	AF7	B	270	273	Right-handed 310
Helix 53	AF8	B	669	672	Right-handed 310
Helix 54	AF9	B	694	697	Right-handed 310

There are 23 sheets in PDB entry 9YZ4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	6	9	first strand
Strand 2	F	37	40	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	59	62	first strand
Strand 2	F	250	253	anti-parallel
Strand 3	F	78	86	anti-parallel
Strand 4	F	91	92	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	59	62	first strand
Strand 2	F	250	253	anti-parallel
Strand 3	F	78	86	anti-parallel
Strand 4	F	301	304	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	157	158	first strand
Strand 2	F	117	118	parallel
Strand 3	F	202	206	parallel
Strand 4	F	94	102	anti-parallel
Strand 5	F	223	227	anti-parallel
Strand 6	F	231	233	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	157	158	first strand
Strand 2	F	117	118	parallel
Strand 3	F	202	206	parallel
Strand 4	F	94	102	anti-parallel
Strand 5	F	244	247	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	342	346	first strand
Strand 2	F	366	370	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	389	391	first strand
Strand 2	F	586	589	anti-parallel
Strand 3	F	405	411	anti-parallel
Strand 4	F	637	639	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	425	428	first strand
Strand 2	F	580	583	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	431	433	first strand
Strand 2	F	559	562	anti-parallel
Strand 3	F	568	570	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	64	first strand
Strand 2	A	148	155	anti-parallel
Strand 3	A	169	175	anti-parallel
Strand 4	A	110	113	parallel
Strand 5	A	116	117	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	90	first strand
Strand 2	A	96	100	anti-parallel

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There are 21 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	277	278	first strand
Strand 2	A	257	260	anti-parallel
Strand 3	A	547	560	parallel
Strand 4	A	493	526	anti-parallel
Strand 5	A	465	489	anti-parallel
Strand 6	A	425	447	anti-parallel
Strand 7	A	394	415	anti-parallel
Strand 8	A	325	341	anti-parallel
Strand 9	A	305	319	anti-parallel
Strand 10	A	216	228	anti-parallel
Strand 11	A	202	213	anti-parallel
Strand 12	A	188	197	anti-parallel
Strand 13	A	906	915	anti-parallel
Strand 14	A	860	867	anti-parallel
Strand 15	A	845	856	anti-parallel
Strand 16	A	804	813	anti-parallel
Strand 17	A	790	798	anti-parallel
Strand 18	A	755	771	anti-parallel
Strand 19	A	716	743	anti-parallel
Strand 20	A	689	713	anti-parallel
Strand 21	A	775	776	anti-parallel

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There are 11 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	277	278	first strand
Strand 2	A	257	260	anti-parallel
Strand 3	A	547	560	parallel
Strand 4	A	493	526	anti-parallel
Strand 5	A	575	592	anti-parallel
Strand 6	A	596	610	anti-parallel
Strand 7	A	620	632	anti-parallel
Strand 8	A	639	649	anti-parallel
Strand 9	A	673	686	anti-parallel
Strand 10	A	689	713	anti-parallel
Strand 11	A	775	776	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	240	250	first strand
Strand 2	A	280	290	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	380	382	first strand
Strand 2	A	388	390	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	822	826	first strand
Strand 2	A	832	836	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	46	first strand
Strand 2	B	699	710	anti-parallel
Strand 3	B	565	576	anti-parallel
Strand 4	B	582	585	anti-parallel

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There are 10 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	46	first strand
Strand 2	B	699	710	anti-parallel
Strand 3	B	674	680	anti-parallel
Strand 4	B	661	668	anti-parallel
Strand 5	B	631	637	anti-parallel
Strand 6	B	621	628	anti-parallel
Strand 7	B	606	612	anti-parallel
Strand 8	B	595	601	anti-parallel
Strand 9	B	565	576	anti-parallel
Strand 10	B	582	585	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	89	90	first strand
Strand 2	B	62	65	anti-parallel
Strand 3	B	183	189	anti-parallel
Strand 4	B	155	161	anti-parallel
Strand 5	B	120	121	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	195	197	first strand
Strand 2	B	401	403	anti-parallel

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There are 10 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	236	237	first strand
Strand 2	B	204	212	anti-parallel
Strand 3	B	359	366	anti-parallel
Strand 4	B	347	353	anti-parallel
Strand 5	B	333	341	anti-parallel
Strand 6	B	307	313	anti-parallel
Strand 7	B	294	304	anti-parallel
Strand 8	B	274	281	anti-parallel
Strand 9	B	262	269	anti-parallel
Strand 10	B	204	212	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	417	419	first strand
Strand 2	B	405	411	anti-parallel
Strand 3	B	545	552	anti-parallel
Strand 4	B	513	521	anti-parallel
Strand 5	B	500	504	anti-parallel
Strand 6	B	463	466	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	428	431	first strand
Strand 2	B	434	437	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9YZ4

Analysis of interatomic Contacts of Structural Units in PDB entry:
9YZ4