Analysis of interatomic Contacts of Structural Units in PDB entry:
9YZP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9YZP entry

There are 4 chains in PDB entry 9YZP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
D
 ARG 7LYS 60
A
 C 1 G 31
B
 G 12 G 42
C
 ASN 14SER 247
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 9YZP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
D
11 25Right-handed alpha
Helix 2
AA2
D
29 40Right-handed alpha
Helix 3
AA3
D
43 60Right-handed alpha
Helix 4
AA4
C
22 26Right-handed alpha
Helix 5
AA5
C
32 49Right-handed alpha
Helix 6
AA6
C
64 72Right-handed alpha
Helix 7
AA7
C
74 89Right-handed alpha
Helix 8
AA8
C
132 134Right-handed 310
Helix 9
AA9
C
135 141Right-handed alpha
Helix 10
AB1
C
151 155Right-handed alpha
Helix 11
AB2
C
159 172Right-handed alpha
Helix 12
AB3
C
185 193Right-handed alpha
Helix 13
AB4
C
195 199Right-handed 310
Helix 14
AB5
C
200 208Right-handed alpha
Helix 15
AB6
C
208 220Right-handed alpha
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There are 4 sheets in PDB entry 9YZP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
17 21first strand
Strand 2
C
146 150anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
59 63first strand
Strand 2
C
126 130anti-parallel
Strand 3
C
120 123anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
93 96first strand
Strand 2
C
110 113anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
179 184first strand
Strand 2
C
234 244anti-parallel
Strand 3
C
222 231anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il