Analysis of interatomic Contacts of Structural Units in PDB entry:
9YZY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9YZY entry

There are 3 chains in PDB entry 9YZY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
N
 GLU 54SER 405
M
 SER 12ASN 405
O
 PRO 264GLU 730
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 9YZY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
N
55 63Right-handed alpha
Helix 2
AA2
N
77 94Right-handed alpha
Helix 3
AA3
N
98 107Right-handed alpha
Helix 4
AA4
N
147 153Right-handed 310
Helix 5
AA5
N
154 170Right-handed alpha
Helix 6
AA6
N
183 190Right-handed alpha
Helix 7
AA7
N
225 227Right-handed 310
Helix 8
AA8
N
228 246Right-handed alpha
Helix 9
AA9
N
248 251Right-handed 310
Helix 10
AB1
N
269 272Right-handed 310
Helix 11
AB2
N
273 280Right-handed alpha
Helix 12
AB3
N
282 289Right-handed alpha
Helix 13
AB4
N
297 311Right-handed alpha
Helix 14
AB5
N
314 318Right-handed 310
Helix 15
AB6
N
327 333Right-handed alpha
Helix 16
AB7
N
338 348Right-handed alpha
Helix 17
AB8
N
353 372Right-handed alpha
Helix 18
AB9
N
376 395Right-handed alpha
Helix 19
AC1
N
399 403Right-handed 310
Helix 20
AC2
M
48 54Right-handed alpha
Helix 21
AC3
M
83 98Right-handed alpha
Helix 22
AC4
M
101 110Right-handed alpha
Helix 23
AC5
M
114 126Right-handed alpha
Helix 24
AC6
M
143 149Right-handed alpha
Helix 25
AC7
M
150 172Right-handed alpha
Helix 26
AC8
M
206 213Right-handed 310
Helix 27
AC9
M
232 261Right-handed alpha
Helix 28
AD1
M
262 264Right-handed 310
Helix 29
AD2
M
266 277Right-handed alpha
Helix 30
AD3
M
278 289Right-handed alpha
Helix 31
AD4
M
290 295Right-handed 310
Helix 32
AD5
M
296 317Right-handed alpha
Helix 33
AD6
M
375 381Right-handed alpha
Helix 34
AD7
M
386 390Right-handed 310
Helix 35
AD8
O
277 286Right-handed alpha
Helix 36
AD9
O
295 299Right-handed 310
Helix 37
AE1
O
318 327Right-handed alpha
Helix 38
AE2
O
328 330Right-handed 310
Helix 39
AE3
O
334 339Right-handed alpha
Helix 40
AE4
O
580 634Right-handed alpha
Helix 41
AE5
O
667 685Right-handed alpha
Helix 42
AE6
O
686 694Right-handed 310
Helix 43
AE7
O
708 730Right-handed alpha
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There are 2 sheets in PDB entry 9YZY. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
66 70first strand
Strand 2
N
112 118anti-parallel
Strand 3
N
123 132anti-parallel
Strand 4
N
137 145anti-parallel
Strand 5
N
174 179parallel
Strand 6
N
214 219anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
253 254first strand
Strand 2
M
67 70anti-parallel
Strand 3
M
33 36anti-parallel
Strand 4
M
45 47anti-parallel
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