Analysis of interatomic Contacts of Structural Units in PDB entry:
9Z01

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9Z01 entry

There are 2 chains in PDB entry 9Z01 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 2	PHE 559
B	LYS 3	LEU 76

There are127 helices in PDB entry 9Z01. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	22	27	Right-handed alpha
Helix 2	AA2	A	33	37	Right-handed 310
Helix 3	AA3	A	38	46	Right-handed alpha
Helix 4	AA4	A	47	49	Right-handed 310
Helix 5	AA5	A	52	56	Right-handed 310
Helix 6	AA6	A	57	64	Right-handed alpha
Helix 7	AA7	A	81	97	Right-handed alpha
Helix 8	AA8	A	106	114	Right-handed 310
Helix 9	AA9	A	115	126	Right-handed alpha
Helix 10	AB1	A	146	148	Right-handed 310
Helix 11	AB2	A	152	161	Right-handed alpha
Helix 12	AB3	A	162	167	Right-handed 310
Helix 13	AB4	A	182	187	Right-handed alpha
Helix 14	AB5	A	194	204	Right-handed alpha
Helix 15	AB6	A	220	235	Right-handed alpha
Helix 16	AB7	A	252	272	Right-handed alpha
Helix 17	AB8	A	285	299	Right-handed alpha
Helix 18	AB9	A	308	312	Right-handed alpha
Helix 19	AC1	A	312	323	Right-handed alpha
Helix 20	AC2	A	335	340	Right-handed alpha
Helix 21	AC3	A	358	370	Right-handed alpha
Helix 22	AC4	A	386	399	Right-handed alpha
Helix 23	AC5	A	416	418	Right-handed 310
Helix 24	AC6	A	419	427	Right-handed alpha
Helix 25	AC7	A	443	448	Right-handed alpha
Helix 26	AC8	A	451	470	Right-handed alpha
Helix 27	AC9	A	472	480	Right-handed alpha
Helix 28	AD1	A	480	491	Right-handed alpha
Helix 29	AD2	A	491	501	Right-handed alpha
Helix 30	AD3	A	533	540	Right-handed alpha
Helix 31	AD4	A	541	550	Right-handed alpha
Helix 32	AD5	A	551	559	Right-handed alpha
Helix 33	AD6	B	22	27	Right-handed alpha
Helix 34	AD7	B	33	37	Right-handed 310
Helix 35	AD8	B	38	46	Right-handed alpha
Helix 36	AD9	B	47	49	Right-handed 310
Helix 37	AE1	B	52	56	Right-handed 310
Helix 38	AE2	B	57	64	Right-handed alpha
Helix 39	AE3	B	81	97	Right-handed alpha
Helix 40	AE4	B	106	114	Right-handed 310
Helix 41	AE5	B	115	126	Right-handed alpha
Helix 42	AE6	B	146	148	Right-handed 310
Helix 43	AE7	B	152	161	Right-handed alpha
Helix 44	AE8	B	162	167	Right-handed 310
Helix 45	AE9	B	182	187	Right-handed alpha
Helix 46	AF1	B	194	204	Right-handed alpha
Helix 47	AF2	B	220	235	Right-handed alpha
Helix 48	AF3	B	252	272	Right-handed alpha
Helix 49	AF4	B	285	299	Right-handed alpha
Helix 50	AF5	B	308	312	Right-handed alpha
Helix 51	AF6	B	312	323	Right-handed alpha
Helix 52	AF7	B	335	340	Right-handed alpha
Helix 53	AF8	B	358	370	Right-handed alpha
Helix 54	AF9	B	386	399	Right-handed alpha
Helix 55	AG1	B	416	418	Right-handed 310
Helix 56	AG2	B	419	427	Right-handed alpha
Helix 57	AG3	B	443	448	Right-handed alpha
Helix 58	AG4	B	451	470	Right-handed alpha
Helix 59	AG5	B	472	480	Right-handed alpha
Helix 60	AG6	B	480	491	Right-handed alpha
Helix 61	AG7	B	491	501	Right-handed alpha
Helix 62	AG8	B	533	538	Right-handed alpha
Helix 63	AG9	B	541	551	Right-handed alpha
Helix 64	AH1	B	551	559	Right-handed alpha
Helix 65	AH2	C	22	27	Right-handed alpha
Helix 66	AH3	C	33	37	Right-handed 310
Helix 67	AH4	C	38	46	Right-handed alpha
Helix 68	AH5	C	47	49	Right-handed 310
Helix 69	AH6	C	52	56	Right-handed 310
Helix 70	AH7	C	57	64	Right-handed alpha
Helix 71	AH8	C	81	97	Right-handed alpha
Helix 72	AH9	C	106	114	Right-handed 310
Helix 73	AI1	C	115	126	Right-handed alpha
Helix 74	AI2	C	146	148	Right-handed 310
Helix 75	AI3	C	152	161	Right-handed alpha
Helix 76	AI4	C	162	167	Right-handed 310
Helix 77	AI5	C	182	187	Right-handed alpha
Helix 78	AI6	C	194	204	Right-handed alpha
Helix 79	AI7	C	220	235	Right-handed alpha
Helix 80	AI8	C	252	272	Right-handed alpha
Helix 81	AI9	C	285	299	Right-handed alpha
Helix 82	AJ1	C	308	312	Right-handed alpha
Helix 83	AJ2	C	312	323	Right-handed alpha
Helix 84	AJ3	C	335	340	Right-handed alpha
Helix 85	AJ4	C	358	370	Right-handed alpha
Helix 86	AJ5	C	386	399	Right-handed alpha
Helix 87	AJ6	C	416	418	Right-handed 310
Helix 88	AJ7	C	419	427	Right-handed alpha
Helix 89	AJ8	C	443	448	Right-handed alpha
Helix 90	AJ9	C	451	470	Right-handed alpha
Helix 91	AK1	C	472	480	Right-handed alpha
Helix 92	AK2	C	480	491	Right-handed alpha
Helix 93	AK3	C	491	501	Right-handed alpha
Helix 94	AK4	C	532	540	Right-handed alpha
Helix 95	AK5	C	541	551	Right-handed alpha
Helix 96	AK6	D	22	27	Right-handed alpha
Helix 97	AK7	D	33	37	Right-handed 310
Helix 98	AK8	D	38	46	Right-handed alpha
Helix 99	AK9	D	47	49	Right-handed 310
Helix 100	AL1	D	52	56	Right-handed 310
Helix 101	AL2	D	57	64	Right-handed alpha
Helix 102	AL3	D	81	97	Right-handed alpha
Helix 103	AL4	D	106	114	Right-handed 310
Helix 104	AL5	D	115	126	Right-handed alpha
Helix 105	AL6	D	146	148	Right-handed 310
Helix 106	AL7	D	152	161	Right-handed alpha
Helix 107	AL8	D	162	167	Right-handed 310
Helix 108	AL9	D	182	187	Right-handed alpha
Helix 109	AM1	D	194	204	Right-handed alpha
Helix 110	AM2	D	220	234	Right-handed alpha
Helix 111	AM3	D	252	272	Right-handed alpha
Helix 112	AM4	D	285	299	Right-handed alpha
Helix 113	AM5	D	308	312	Right-handed alpha
Helix 114	AM6	D	312	323	Right-handed alpha
Helix 115	AM7	D	335	340	Right-handed alpha
Helix 116	AM8	D	358	370	Right-handed alpha
Helix 117	AM9	D	386	399	Right-handed alpha
Helix 118	AN1	D	416	418	Right-handed 310
Helix 119	AN2	D	419	427	Right-handed alpha
Helix 120	AN3	D	443	448	Right-handed alpha
Helix 121	AN4	D	451	470	Right-handed alpha
Helix 122	AN5	D	472	478	Right-handed alpha
Helix 123	AN6	D	480	491	Right-handed alpha
Helix 124	AN7	D	491	501	Right-handed alpha
Helix 125	AN8	D	532	540	Right-handed alpha
Helix 126	AN9	D	542	550	Right-handed alpha
Helix 127	AO1	D	551	558	Right-handed alpha

There are 14 sheets in PDB entry 9Z01. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	5	first strand
Strand 2	C	343	346	anti-parallel
Strand 3	C	349	352	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	133	first strand
Strand 2	A	138	144	anti-parallel
Strand 3	A	65	74	anti-parallel
Strand 4	A	171	180	anti-parallel
Strand 5	A	356	357	parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	276	278	first strand
Strand 2	A	238	240	parallel
Strand 3	A	208	212	parallel
Strand 4	A	439	441	parallel
Strand 5	A	408	412	parallel
Strand 6	A	373	375	parallel
Strand 7	A	327	331	parallel
Strand 8	A	303	307	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	349	352	first strand
Strand 2	A	343	346	anti-parallel
Strand 3	C	4	5	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	507	508	first strand
Strand 2	A	531	532	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	133	first strand
Strand 2	B	138	144	anti-parallel
Strand 3	B	65	74	anti-parallel
Strand 4	B	171	180	anti-parallel
Strand 5	B	356	357	parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	276	278	first strand
Strand 2	B	238	240	parallel
Strand 3	B	208	212	parallel
Strand 4	B	439	441	parallel
Strand 5	B	408	411	parallel
Strand 6	B	373	375	parallel
Strand 7	B	327	331	parallel
Strand 8	B	303	307	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	349	352	first strand
Strand 2	B	343	346	anti-parallel
Strand 3	D	4	5	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	507	508	first strand
Strand 2	B	531	532	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	128	133	first strand
Strand 2	C	138	144	anti-parallel
Strand 3	C	65	74	anti-parallel
Strand 4	C	171	180	anti-parallel
Strand 5	C	356	357	parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	276	278	first strand
Strand 2	C	238	240	parallel
Strand 3	C	208	212	parallel
Strand 4	C	439	441	parallel
Strand 5	C	408	412	parallel
Strand 6	C	373	375	parallel
Strand 7	C	327	331	parallel
Strand 8	C	303	307	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	128	133	first strand
Strand 2	D	138	144	anti-parallel
Strand 3	D	65	74	anti-parallel
Strand 4	D	171	180	anti-parallel
Strand 5	D	356	357	parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	276	278	first strand
Strand 2	D	238	240	parallel
Strand 3	D	208	212	parallel
Strand 4	D	439	441	parallel
Strand 5	D	408	411	parallel
Strand 6	D	373	375	parallel
Strand 7	D	327	331	parallel
Strand 8	D	303	307	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	343	345	first strand
Strand 2	D	350	352	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9Z01

Analysis of interatomic Contacts of Structural Units in PDB entry:
9Z01