Analysis of interatomic Contacts of Structural Units in PDB entry:
9Z07

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9Z07 entry

There are 11 chains in PDB entry 9Z07 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 616	ALA 1600
N	THR 10	THR 120
O	LYS 28	ALA 121
P	LYS 36	ALA 135
Q	VAL 21	GLY 102
X	A 1	A 149
Y	T -1	T 147
n	THR 10	LYS 119
o	LYS 25	LYS 122
p	LYS 36	ARG 134
q	ARG 23	GLY 102

There are 63 helices in PDB entry 9Z07. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	656	661	Right-handed alpha
Helix 2	AA2	A	667	673	Right-handed alpha
Helix 3	AA3	A	674	677	Right-handed 310
Helix 4	AA4	A	686	690	Right-handed 310
Helix 5	AA5	A	805	809	Right-handed 310
Helix 6	AA6	A	826	828	Right-handed 310
Helix 7	AA7	A	893	906	Right-handed alpha
Helix 8	AA8	A	971	975	Right-handed 310
Helix 9	AA9	A	1030	1035	Right-handed 310
Helix 10	AB1	A	1054	1056	Right-handed 310
Helix 11	AB2	A	1071	1079	Right-handed alpha
Helix 12	AB3	A	1100	1104	Right-handed 310
Helix 13	AB4	A	1149	1158	Right-handed alpha
Helix 14	AB5	A	1170	1181	Right-handed alpha
Helix 15	AB6	A	1190	1200	Right-handed alpha
Helix 16	AB7	A	1246	1259	Right-handed alpha
Helix 17	AB8	A	1270	1273	Right-handed 310
Helix 18	AB9	A	1277	1291	Right-handed alpha
Helix 19	AC1	A	1302	1305	Right-handed 310
Helix 20	AC2	A	1335	1339	Right-handed 310
Helix 21	AC3	A	1394	1402	Right-handed alpha
Helix 22	AC4	A	1418	1426	Right-handed alpha
Helix 23	AC5	A	1435	1439	Right-handed 310
Helix 24	AC6	A	1476	1480	Right-handed 310
Helix 25	AC7	A	1499	1504	Right-handed alpha
Helix 26	AC8	A	1505	1511	Right-handed 310
Helix 27	AC9	A	1549	1557	Right-handed alpha
Helix 28	AD1	A	1568	1579	Right-handed alpha
Helix 29	AD2	A	1581	1600	Right-handed alpha
Helix 30	AD3	N	16	21	Right-handed alpha
Helix 31	AD4	N	26	37	Right-handed alpha
Helix 32	AD5	N	46	73	Right-handed alpha
Helix 33	AD6	N	79	90	Right-handed alpha
Helix 34	AD7	N	90	97	Right-handed alpha
Helix 35	AD8	N	112	116	Right-handed 310
Helix 36	AD9	O	34	46	Right-handed alpha
Helix 37	AE1	O	52	80	Right-handed alpha
Helix 38	AE2	O	87	99	Right-handed alpha
Helix 39	AE3	O	100	121	Right-handed alpha
Helix 40	AE4	P	44	57	Right-handed alpha
Helix 41	AE5	P	63	76	Right-handed alpha
Helix 42	AE6	P	85	114	Right-handed alpha
Helix 43	AE7	P	120	131	Right-handed alpha
Helix 44	AE8	Q	25	29	Right-handed 310
Helix 45	AE9	Q	30	42	Right-handed alpha
Helix 46	AF1	Q	49	76	Right-handed alpha
Helix 47	AF2	Q	82	94	Right-handed alpha
Helix 48	AF3	n	16	21	Right-handed alpha
Helix 49	AF4	n	26	37	Right-handed alpha
Helix 50	AF5	n	46	74	Right-handed alpha
Helix 51	AF6	n	79	90	Right-handed alpha
Helix 52	AF7	n	91	97	Right-handed alpha
Helix 53	AF8	o	34	46	Right-handed alpha
Helix 54	AF9	o	52	81	Right-handed alpha
Helix 55	AG1	o	87	99	Right-handed alpha
Helix 56	AG2	o	100	122	Right-handed alpha
Helix 57	AG3	p	44	56	Right-handed alpha
Helix 58	AG4	p	63	79	Right-handed alpha
Helix 59	AG5	p	85	114	Right-handed alpha
Helix 60	AG6	p	120	131	Right-handed alpha
Helix 61	AG7	q	30	42	Right-handed alpha
Helix 62	AG8	q	49	76	Right-handed alpha
Helix 63	AG9	q	82	93	Right-handed alpha

There are 17 sheets in PDB entry 9Z07. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	750	752	first strand
Strand 2	A	756	758	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	830	831	first strand
Strand 2	A	761	765	anti-parallel
Strand 3	A	775	784	anti-parallel
Strand 4	A	790	799	anti-parallel
Strand 5	A	813	824	anti-parallel
Strand 6	A	863	869	parallel
Strand 7	A	834	836	parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	830	831	first strand
Strand 2	A	761	765	anti-parallel
Strand 3	A	775	784	anti-parallel
Strand 4	A	790	799	anti-parallel
Strand 5	A	813	824	anti-parallel
Strand 6	A	863	869	parallel
Strand 7	A	876	877	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	909	912	first strand
Strand 2	A	925	928	anti-parallel
Strand 3	A	931	934	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	915	916	first strand
Strand 2	A	920	923	anti-parallel
Strand 3	A	992	1002	anti-parallel
Strand 4	A	938	941	anti-parallel
Strand 5	A	1058	1064	anti-parallel
Strand 6	A	1082	1090	parallel
Strand 7	A	1095	1097	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	915	916	first strand
Strand 2	A	920	923	anti-parallel
Strand 3	A	992	1002	anti-parallel
Strand 4	A	1015	1022	anti-parallel
Strand 5	A	1041	1052	anti-parallel
Strand 6	A	1082	1090	parallel
Strand 7	A	1095	1097	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1185	1187	first strand
Strand 2	A	1161	1167	parallel
Strand 3	A	1139	1144	parallel
Strand 4	A	1219	1221	parallel
Strand 5	A	1262	1268	parallel
Strand 6	A	1311	1318	anti-parallel
Strand 7	A	1293	1300	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1343	1345	first strand
Strand 2	A	1348	1350	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1444	1445	first strand
Strand 2	A	1451	1452	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	42	43	first strand
Strand 2	O	85	86	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	77	78	first strand
Strand 2	O	50	51	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	100	102	first strand
Strand 2	q	96	98	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	83	84	first strand
Strand 2	Q	80	81	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	96	98	first strand
Strand 2	n	100	102	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	n	42	43	first strand
Strand 2	o	85	86	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	n	77	78	first strand
Strand 2	o	50	51	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	p	83	84	first strand
Strand 2	q	80	81	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9Z07

Analysis of interatomic Contacts of Structural Units in PDB entry:
9Z07