Analysis of interatomic Contacts of Structural Units in PDB entry:
9Z0A


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9Z0A entry

There are 2 chains in PDB entry 9Z0A (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 8SER 325
B
 ASN 8HIS 326
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 20 helices in PDB entry 9Z0A. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
57 62Right-handed alpha
Helix 2
AA2
A
75 78Right-handed 310
Helix 3
AA3
A
79 94Right-handed alpha
Helix 4
AA4
A
100 104Right-handed 310
Helix 5
AA5
A
125 135Right-handed alpha
Helix 6
AA6
A
146 150Right-handed 310
Helix 7
AA7
A
207 220Right-handed alpha
Helix 8
AA8
A
245 261Right-handed alpha
Helix 9
AA9
A
294 300Right-handed 310
Helix 10
AB1
A
301 322Right-handed alpha
Helix 11
AB2
B
57 62Right-handed alpha
Helix 12
AB3
B
75 78Right-handed 310
Helix 13
AB4
B
79 94Right-handed alpha
Helix 14
AB5
B
100 104Right-handed 310
Helix 15
AB6
B
125 135Right-handed alpha
Helix 16
AB7
B
146 150Right-handed 310
Helix 17
AB8
B
207 220Right-handed alpha
Helix 18
AB9
B
245 261Right-handed alpha
Helix 19
AC1
B
294 300Right-handed 310
Helix 20
AC2
B
301 322Right-handed alpha
Back to top of page

There are 10 sheets in PDB entry 9Z0A. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 11first strand
Strand 2
A
140 142anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 54first strand
Strand 2
A
107 111anti-parallel
Strand 3
A
65 73parallel
Strand 4
A
29 46anti-parallel
Strand 5
A
18 24anti-parallel
Strand 6
A
137 138anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 54first strand
Strand 2
A
107 111anti-parallel
Strand 3
A
65 73parallel
Strand 4
A
29 46anti-parallel
Strand 5
A
275 284anti-parallel
Strand 6
A
234 242parallel
Strand 7
A
177 185anti-parallel
Strand 8
A
166 174anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
153 154first strand
Strand 2
A
163 164anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 200first strand
Strand 2
A
190 192anti-parallel
Strand 3
A
264 265anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 11first strand
Strand 2
B
140 142anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 54first strand
Strand 2
B
107 111anti-parallel
Strand 3
B
65 73parallel
Strand 4
B
29 46anti-parallel
Strand 5
B
18 24anti-parallel
Strand 6
B
137 138anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 54first strand
Strand 2
B
107 111anti-parallel
Strand 3
B
65 73parallel
Strand 4
B
29 46anti-parallel
Strand 5
B
275 284anti-parallel
Strand 6
B
234 242parallel
Strand 7
B
177 185anti-parallel
Strand 8
B
166 174anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
153 154first strand
Strand 2
B
163 164anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
198 200first strand
Strand 2
B
190 192anti-parallel
Strand 3
B
264 265anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il