Analysis of interatomic Contacts of Structural Units in PDB entry:
9Z12


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9Z12 entry

There are 3 chains in PDB entry 9Z12 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
H
 GLN 1VAL 111
L
 GLN 3LYS 107
A
 THR 719PRO 1069
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 9Z12. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
H
83 87Right-handed 310
Helix 2
AA2
H
97 100Right-handed 310
Helix 3
AA3
L
79 83Right-handed 310
Helix 4
AA4
A
737 742Right-handed alpha
Helix 5
AA5
A
748 783Right-handed alpha
Helix 6
AA6
A
802 806Right-handed 310
Helix 7
AA7
A
816 826Right-handed alpha
Helix 8
AA8
A
831 842Right-handed alpha
Helix 9
AA9
A
844 846Right-handed 310
Helix 10
AB1
A
847 855Right-handed alpha
Helix 11
AB2
A
866 884Right-handed alpha
Helix 12
AB3
A
897 907Right-handed alpha
Helix 13
AB4
A
908 910Right-handed 310
Helix 14
AB5
A
913 919Right-handed alpha
Helix 15
AB6
A
919 929Right-handed alpha
Helix 16
AB7
A
929 941Right-handed alpha
Helix 17
AB8
A
942 944Right-handed 310
Helix 18
AB9
A
945 968Right-handed alpha
Helix 19
AC1
A
976 984Right-handed alpha
Helix 20
AC2
A
985 1032Right-handed alpha
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There are 8 sheets in PDB entry 9Z12. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 7first strand
Strand 2
H
17 25anti-parallel
Strand 3
H
80 82anti-parallel
Strand 4
H
67 69anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
57 59first strand
Strand 2
H
45 51anti-parallel
Strand 3
H
34 39anti-parallel
Strand 4
H
88 95anti-parallel
Strand 5
H
100 103anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
57 59first strand
Strand 2
H
45 51anti-parallel
Strand 3
H
34 39anti-parallel
Strand 4
H
88 95anti-parallel
Strand 5
H
107 109anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
5 7first strand
Strand 2
L
19 24anti-parallel
Strand 3
L
70 75anti-parallel
Strand 4
L
62 65anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
45 46first strand
Strand 2
L
33 38anti-parallel
Strand 3
L
85 90anti-parallel
Strand 4
L
97 98anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
45 46first strand
Strand 2
L
33 38anti-parallel
Strand 3
L
85 90anti-parallel
Strand 4
L
102 103anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
720 727first strand
Strand 2
A
1059 1067anti-parallel
Strand 3
A
1047 1056anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
734 736first strand
Strand 2
A
858 860anti-parallel
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