Analysis of interatomic Contacts of Structural Units in PDB entry:
9Z2T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9Z2T entry

There are 2 chains in PDB entry 9Z2T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 35VAL 706
B
 G 1 C 75
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 30 helices in PDB entry 9Z2T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
45 55Right-handed alpha
Helix 2
AA2
A
62 71Right-handed alpha
Helix 3
AA3
A
86 97Right-handed alpha
Helix 4
AA4
A
121 124Right-handed 310
Helix 5
AA5
A
133 139Right-handed alpha
Helix 6
AA6
A
142 155Right-handed alpha
Helix 7
AA7
A
163 165Right-handed 310
Helix 8
AA8
A
166 173Right-handed alpha
Helix 9
AA9
A
188 199Right-handed alpha
Helix 10
AB1
A
217 229Right-handed alpha
Helix 11
AB2
A
242 246Right-handed 310
Helix 12
AB3
A
273 277Right-handed 310
Helix 13
AB4
A
282 287Right-handed alpha
Helix 14
AB5
A
289 309Right-handed alpha
Helix 15
AB6
A
328 340Right-handed alpha
Helix 16
AB7
A
376 380Right-handed 310
Helix 17
AB8
A
381 385Right-handed 310
Helix 18
AB9
A
389 393Right-handed 310
Helix 19
AC1
A
397 405Right-handed alpha
Helix 20
AC2
A
406 408Right-handed 310
Helix 21
AC3
A
413 418Right-handed alpha
Helix 22
AC4
A
529 538Right-handed alpha
Helix 23
AC5
A
544 546Right-handed 310
Helix 24
AC6
A
564 574Right-handed alpha
Helix 25
AC7
A
607 612Right-handed alpha
Helix 26
AC8
A
613 615Right-handed 310
Helix 27
AC9
A
623 633Right-handed alpha
Helix 28
AD1
A
637 641Right-handed 310
Helix 29
AD2
A
642 650Right-handed alpha
Helix 30
AD3
A
691 702Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 9Z2T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 117first strand
Strand 2
A
126 132anti-parallel
Strand 3
A
75 80anti-parallel
Strand 4
A
158 160anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 107first strand
Strand 2
A
110 111anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
343 345first strand
Strand 2
A
422 429anti-parallel
Strand 3
A
410 412anti-parallel
Strand 4
A
358 359anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
343 345first strand
Strand 2
A
422 429anti-parallel
Strand 3
A
310 320anti-parallel
Strand 4
A
262 267parallel
Strand 5
A
179 182parallel
Strand 6
A
210 215parallel
Strand 7
A
236 240parallel
Strand 8
A
580 583anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
250 253first strand
Strand 2
A
256 259anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
366 367first strand
Strand 2
A
373 374anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
521 522first strand
Strand 2
A
548 550anti-parallel
Strand 3
A
559 562anti-parallel
Strand 4
A
585 590anti-parallel
Strand 5
A
601 603anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
619 622first strand
Strand 2
A
655 661parallel
Strand 3
A
675 681anti-parallel
Strand 4
A
686 688anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il