Analysis of interatomic Contacts of Structural Units in PDB entry:
9Z3W

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9Z3W entry

There are 6 chains in PDB entry 9Z3W (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 33	LYS 1761
B	LYS 33	LEU 1755
C	ASP 3	GLY 151
D	LYS 8	ASP 171
E	ARG 13	ASP 171
F	ASP 3	GLY 151

There are121 helices in PDB entry 9Z3W. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	74	76	Right-handed 310
Helix 2	AA2	A	89	93	Right-handed 310
Helix 3	AA3	A	97	111	Right-handed alpha
Helix 4	AA4	A	135	142	Right-handed alpha
Helix 5	AA5	A	154	168	Right-handed alpha
Helix 6	AA6	A	183	197	Right-handed alpha
Helix 7	AA7	A	200	205	Right-handed alpha
Helix 8	AA8	A	212	229	Right-handed alpha
Helix 9	AA9	A	281	286	Right-handed alpha
Helix 10	AB1	A	286	291	Right-handed alpha
Helix 11	AB2	A	292	299	Right-handed alpha
Helix 12	AB3	A	321	336	Right-handed alpha
Helix 13	AB4	A	339	351	Right-handed alpha
Helix 14	AB5	A	353	359	Right-handed 310
Helix 15	AB6	A	377	385	Right-handed alpha
Helix 16	AB7	A	388	398	Right-handed alpha
Helix 17	AB8	A	413	445	Right-handed alpha
Helix 18	AB9	A	470	503	Right-handed alpha
Helix 19	AC1	A	516	521	Right-handed alpha
Helix 20	AC2	A	530	540	Right-handed alpha
Helix 21	AC3	A	545	557	Right-handed alpha
Helix 22	AC4	A	590	597	Right-handed alpha
Helix 23	AC5	A	600	609	Right-handed alpha
Helix 24	AC6	A	612	619	Right-handed alpha
Helix 25	AC7	A	652	669	Right-handed alpha
Helix 26	AC8	A	693	701	Right-handed alpha
Helix 27	AC9	A	703	714	Right-handed alpha
Helix 28	AD1	A	721	729	Right-handed alpha
Helix 29	AD2	A	730	732	Right-handed 310
Helix 30	AD3	A	742	754	Right-handed alpha
Helix 31	AD4	A	775	783	Right-handed alpha
Helix 32	AD5	A	786	828	Right-handed alpha
Helix 33	AD6	A	832	841	Right-handed alpha
Helix 34	AD7	A	844	1051	Right-handed alpha
Helix 35	AD8	A	1272	1518	Right-handed alpha
Helix 36	AD9	A	1519	1521	Right-handed 310
Helix 37	AE1	A	1522	1526	Right-handed 310
Helix 38	AE2	A	1531	1625	Right-handed alpha
Helix 39	AE3	A	1625	1653	Right-handed alpha
Helix 40	AE4	A	1653	1761	Right-handed alpha
Helix 41	AE5	B	81	85	Right-handed 310
Helix 42	AE6	B	89	93	Right-handed 310
Helix 43	AE7	B	97	111	Right-handed alpha
Helix 44	AE8	B	135	143	Right-handed alpha
Helix 45	AE9	B	146	150	Right-handed 310
Helix 46	AF1	B	153	168	Right-handed alpha
Helix 47	AF2	B	183	205	Right-handed alpha
Helix 48	AF3	B	210	221	Right-handed alpha
Helix 49	AF4	B	222	227	Right-handed alpha
Helix 50	AF5	B	267	272	Right-handed 310
Helix 51	AF6	B	281	291	Right-handed alpha
Helix 52	AF7	B	292	299	Right-handed alpha
Helix 53	AF8	B	321	336	Right-handed alpha
Helix 54	AF9	B	339	357	Right-handed alpha
Helix 55	AG1	B	375	386	Right-handed alpha
Helix 56	AG2	B	388	398	Right-handed alpha
Helix 57	AG3	B	413	445	Right-handed alpha
Helix 58	AG4	B	470	489	Right-handed alpha
Helix 59	AG5	B	493	503	Right-handed alpha
Helix 60	AG6	B	516	524	Right-handed alpha
Helix 61	AG7	B	530	540	Right-handed alpha
Helix 62	AG8	B	545	557	Right-handed alpha
Helix 63	AG9	B	590	597	Right-handed alpha
Helix 64	AH1	B	600	609	Right-handed alpha
Helix 65	AH2	B	612	619	Right-handed alpha
Helix 66	AH3	B	652	668	Right-handed alpha
Helix 67	AH4	B	669	671	Right-handed 310
Helix 68	AH5	B	691	702	Right-handed alpha
Helix 69	AH6	B	705	710	Right-handed alpha
Helix 70	AH7	B	711	713	Right-handed 310
Helix 71	AH8	B	721	729	Right-handed alpha
Helix 72	AH9	B	742	754	Right-handed alpha
Helix 73	AI1	B	757	759	Right-handed 310
Helix 74	AI2	B	775	829	Right-handed alpha
Helix 75	AI3	B	831	842	Right-handed alpha
Helix 76	AI4	B	844	852	Right-handed alpha
Helix 77	AI5	B	853	942	Right-handed alpha
Helix 78	AI6	B	943	1042	Right-handed alpha
Helix 79	AI7	B	1268	1451	Right-handed alpha
Helix 80	AI8	B	1452	1523	Right-handed alpha
Helix 81	AI9	B	1529	1705	Right-handed alpha
Helix 82	AJ1	B	1705	1755	Right-handed alpha
Helix 83	AJ2	C	5	19	Right-handed alpha
Helix 84	AJ3	C	31	39	Right-handed alpha
Helix 85	AJ4	C	44	51	Right-handed alpha
Helix 86	AJ5	C	56	61	Right-handed alpha
Helix 87	AJ6	C	66	79	Right-handed alpha
Helix 88	AJ7	C	85	95	Right-handed alpha
Helix 89	AJ8	C	106	116	Right-handed alpha
Helix 90	AJ9	C	121	130	Right-handed alpha
Helix 91	AK1	C	141	150	Right-handed alpha
Helix 92	AK2	D	20	25	Right-handed alpha
Helix 93	AK3	D	26	41	Right-handed alpha
Helix 94	AK4	D	49	59	Right-handed alpha
Helix 95	AK5	D	65	74	Right-handed alpha
Helix 96	AK6	D	81	94	Right-handed alpha
Helix 97	AK7	D	98	107	Right-handed alpha
Helix 98	AK8	D	108	110	Right-handed 310
Helix 99	AK9	D	119	127	Right-handed alpha
Helix 100	AL1	D	134	145	Right-handed alpha
Helix 101	AL2	D	155	165	Right-handed alpha
Helix 102	AL3	E	18	23	Right-handed alpha
Helix 103	AL4	E	26	41	Right-handed alpha
Helix 104	AL5	E	49	59	Right-handed alpha
Helix 105	AL6	E	65	76	Right-handed alpha
Helix 106	AL7	E	82	94	Right-handed alpha
Helix 107	AL8	E	98	105	Right-handed alpha
Helix 108	AL9	E	106	110	Right-handed 310
Helix 109	AM1	E	118	128	Right-handed alpha
Helix 110	AM2	E	134	144	Right-handed alpha
Helix 111	AM3	E	155	162	Right-handed alpha
Helix 112	AM4	F	5	19	Right-handed alpha
Helix 113	AM5	F	28	30	Right-handed 310
Helix 114	AM6	F	31	38	Right-handed alpha
Helix 115	AM7	F	44	51	Right-handed alpha
Helix 116	AM8	F	66	80	Right-handed alpha
Helix 117	AM9	F	85	93	Right-handed alpha
Helix 118	AN1	F	94	97	Right-handed 310
Helix 119	AN2	F	105	116	Right-handed alpha
Helix 120	AN3	F	121	130	Right-handed alpha
Helix 121	AN4	F	140	150	Right-handed alpha

There are 18 sheets in PDB entry 9Z3W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	38	first strand
Strand 2	A	46	54	anti-parallel
Strand 3	A	57	62	anti-parallel
Strand 4	A	68	72	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	115	118	first strand
Strand 2	A	121	125	anti-parallel
Strand 3	A	672	679	parallel
Strand 4	A	172	177	parallel
Strand 5	A	453	459	parallel
Strand 6	A	244	250	anti-parallel
Strand 7	A	256	263	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	230	231	first strand
Strand 2	A	239	240	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	400	403	first strand
Strand 2	A	406	409	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	575	579	first strand
Strand 2	A	582	586	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	717	720	first strand
Strand 2	A	767	770	anti-parallel
Strand 3	A	761	763	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	39	first strand
Strand 2	B	45	49	anti-parallel
Strand 3	B	61	62	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	115	117	first strand
Strand 2	B	122	125	anti-parallel
Strand 3	B	672	679	parallel
Strand 4	B	172	178	parallel
Strand 5	B	455	459	parallel
Strand 6	B	243	250	anti-parallel
Strand 7	B	256	264	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	230	231	first strand
Strand 2	B	239	240	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	362	364	first strand
Strand 2	B	369	371	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	400	403	first strand
Strand 2	B	406	409	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	563	564	first strand
Strand 2	B	575	577	anti-parallel
Strand 3	B	584	586	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	717	720	first strand
Strand 2	B	767	770	anti-parallel
Strand 3	B	761	763	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	28	first strand
Strand 2	C	64	65	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	103	105	first strand
Strand 2	C	138	140	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	116	118	first strand
Strand 2	D	152	154	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	47	48	first strand
Strand 2	E	80	81	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	116	117	first strand
Strand 2	E	153	154	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9Z3W

Analysis of interatomic Contacts of Structural Units in PDB entry:
9Z3W