Analysis of interatomic Contacts of Structural Units in PDB entry:
9Z40

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9Z40 entry

There are 6 chains in PDB entry 9Z40 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 33	LYS 1925
B	LYS 33	LYS 1925
C	ASP 3	GLY 151
D	LYS 3	ASP 171
E	ARG 13	ASP 171
F	ASP 3	GLY 151

There are140 helices in PDB entry 9Z40. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	74	76	Right-handed 310
Helix 2	AA2	A	81	85	Right-handed 310
Helix 3	AA3	A	89	93	Right-handed 310
Helix 4	AA4	A	97	111	Right-handed alpha
Helix 5	AA5	A	135	143	Right-handed alpha
Helix 6	AA6	A	146	150	Right-handed 310
Helix 7	AA7	A	153	168	Right-handed alpha
Helix 8	AA8	A	183	199	Right-handed alpha
Helix 9	AA9	A	212	229	Right-handed alpha
Helix 10	AB1	A	267	272	Right-handed 310
Helix 11	AB2	A	281	291	Right-handed alpha
Helix 12	AB3	A	292	300	Right-handed alpha
Helix 13	AB4	A	303	307	Right-handed 310
Helix 14	AB5	A	321	337	Right-handed alpha
Helix 15	AB6	A	339	357	Right-handed alpha
Helix 16	AB7	A	375	386	Right-handed alpha
Helix 17	AB8	A	388	398	Right-handed alpha
Helix 18	AB9	A	413	445	Right-handed alpha
Helix 19	AC1	A	470	492	Right-handed alpha
Helix 20	AC2	A	492	502	Right-handed alpha
Helix 21	AC3	A	516	524	Right-handed alpha
Helix 22	AC4	A	532	539	Right-handed alpha
Helix 23	AC5	A	545	558	Right-handed alpha
Helix 24	AC6	A	590	597	Right-handed alpha
Helix 25	AC7	A	600	609	Right-handed alpha
Helix 26	AC8	A	612	619	Right-handed alpha
Helix 27	AC9	A	627	631	Right-handed 310
Helix 28	AD1	A	652	670	Right-handed alpha
Helix 29	AD2	A	691	702	Right-handed alpha
Helix 30	AD3	A	703	714	Right-handed alpha
Helix 31	AD4	A	721	728	Right-handed alpha
Helix 32	AD5	A	729	732	Right-handed 310
Helix 33	AD6	A	742	754	Right-handed alpha
Helix 34	AD7	A	757	759	Right-handed 310
Helix 35	AD8	A	774	828	Right-handed alpha
Helix 36	AD9	A	832	1014	Right-handed alpha
Helix 37	AE1	A	1016	1164	Right-handed alpha
Helix 38	AE2	A	1165	1168	Right-handed 310
Helix 39	AE3	A	1169	1174	Right-handed alpha
Helix 40	AE4	A	1175	1181	Right-handed alpha
Helix 41	AE5	A	1182	1204	Right-handed alpha
Helix 42	AE6	A	1206	1222	Right-handed alpha
Helix 43	AE7	A	1222	1235	Right-handed alpha
Helix 44	AE8	A	1236	1305	Right-handed alpha
Helix 45	AE9	A	1307	1316	Right-handed alpha
Helix 46	AF1	A	1319	1518	Right-handed alpha
Helix 47	AF2	A	1518	1525	Right-handed alpha
Helix 48	AF3	A	1529	1534	Right-handed alpha
Helix 49	AF4	A	1534	1720	Right-handed alpha
Helix 50	AF5	A	1720	1924	Right-handed alpha
Helix 51	AF6	B	72	76	Right-handed 310
Helix 52	AF7	B	81	85	Right-handed 310
Helix 53	AF8	B	89	93	Right-handed 310
Helix 54	AF9	B	97	111	Right-handed alpha
Helix 55	AG1	B	135	143	Right-handed alpha
Helix 56	AG2	B	146	150	Right-handed 310
Helix 57	AG3	B	153	169	Right-handed alpha
Helix 58	AG4	B	183	201	Right-handed alpha
Helix 59	AG5	B	214	220	Right-handed 310
Helix 60	AG6	B	221	227	Right-handed alpha
Helix 61	AG7	B	267	272	Right-handed 310
Helix 62	AG8	B	281	291	Right-handed alpha
Helix 63	AG9	B	292	299	Right-handed alpha
Helix 64	AH1	B	303	307	Right-handed 310
Helix 65	AH2	B	321	335	Right-handed alpha
Helix 66	AH3	B	339	357	Right-handed alpha
Helix 67	AH4	B	374	386	Right-handed alpha
Helix 68	AH5	B	388	398	Right-handed alpha
Helix 69	AH6	B	413	444	Right-handed alpha
Helix 70	AH7	B	470	502	Right-handed alpha
Helix 71	AH8	B	516	524	Right-handed alpha
Helix 72	AH9	B	530	540	Right-handed alpha
Helix 73	AI1	B	545	558	Right-handed alpha
Helix 74	AI2	B	590	597	Right-handed alpha
Helix 75	AI3	B	600	609	Right-handed alpha
Helix 76	AI4	B	612	619	Right-handed alpha
Helix 77	AI5	B	621	625	Right-handed 310
Helix 78	AI6	B	652	669	Right-handed alpha
Helix 79	AI7	B	691	702	Right-handed alpha
Helix 80	AI8	B	703	714	Right-handed alpha
Helix 81	AI9	B	723	728	Right-handed alpha
Helix 82	AJ1	B	744	754	Right-handed alpha
Helix 83	AJ2	B	757	759	Right-handed 310
Helix 84	AJ3	B	773	828	Right-handed alpha
Helix 85	AJ4	B	831	841	Right-handed alpha
Helix 86	AJ5	B	842	845	Right-handed 310
Helix 87	AJ6	B	847	853	Right-handed alpha
Helix 88	AJ7	B	855	979	Right-handed alpha
Helix 89	AJ8	B	979	1014	Right-handed alpha
Helix 90	AJ9	B	1014	1027	Right-handed alpha
Helix 91	AK1	B	1027	1036	Right-handed alpha
Helix 92	AK2	B	1036	1075	Right-handed alpha
Helix 93	AK3	B	1075	1118	Right-handed alpha
Helix 94	AK4	B	1118	1163	Right-handed alpha
Helix 95	AK5	B	1165	1189	Right-handed alpha
Helix 96	AK6	B	1190	1328	Right-handed alpha
Helix 97	AK7	B	1329	1333	Right-handed 310
Helix 98	AK8	B	1334	1523	Right-handed alpha
Helix 99	AK9	B	1523	1528	Right-handed alpha
Helix 100	AL1	B	1528	1603	Right-handed alpha
Helix 101	AL2	B	1604	1625	Right-handed alpha
Helix 102	AL3	B	1625	1638	Right-handed alpha
Helix 103	AL4	B	1638	1925	Right-handed alpha
Helix 104	AL5	C	5	19	Right-handed alpha
Helix 105	AL6	C	30	39	Right-handed alpha
Helix 106	AL7	C	44	52	Right-handed alpha
Helix 107	AL8	C	56	61	Right-handed alpha
Helix 108	AL9	C	67	79	Right-handed alpha
Helix 109	AM1	C	85	95	Right-handed alpha
Helix 110	AM2	C	106	116	Right-handed alpha
Helix 111	AM3	C	121	130	Right-handed alpha
Helix 112	AM4	C	141	151	Right-handed alpha
Helix 113	AM5	D	20	25	Right-handed alpha
Helix 114	AM6	D	26	41	Right-handed alpha
Helix 115	AM7	D	49	59	Right-handed alpha
Helix 116	AM8	D	65	74	Right-handed alpha
Helix 117	AM9	D	82	93	Right-handed alpha
Helix 118	AN1	D	98	108	Right-handed alpha
Helix 119	AN2	D	119	129	Right-handed alpha
Helix 120	AN3	D	134	144	Right-handed alpha
Helix 121	AN4	D	155	165	Right-handed alpha
Helix 122	AN5	E	18	23	Right-handed alpha
Helix 123	AN6	E	26	41	Right-handed alpha
Helix 124	AN7	E	49	60	Right-handed alpha
Helix 125	AN8	E	65	76	Right-handed alpha
Helix 126	AN9	E	82	94	Right-handed alpha
Helix 127	AO1	E	98	106	Right-handed alpha
Helix 128	AO2	E	107	110	Right-handed 310
Helix 129	AO3	E	118	127	Right-handed alpha
Helix 130	AO4	E	134	144	Right-handed alpha
Helix 131	AO5	E	155	164	Right-handed alpha
Helix 132	AO6	F	5	17	Right-handed alpha
Helix 133	AO7	F	18	20	Right-handed 310
Helix 134	AO8	F	31	39	Right-handed alpha
Helix 135	AO9	F	44	52	Right-handed alpha
Helix 136	AP1	F	70	79	Right-handed alpha
Helix 137	AP2	F	85	94	Right-handed alpha
Helix 138	AP3	F	106	116	Right-handed alpha
Helix 139	AP4	F	121	130	Right-handed alpha
Helix 140	AP5	F	140	149	Right-handed alpha

There are 21 sheets in PDB entry 9Z40. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	40	first strand
Strand 2	A	44	54	anti-parallel
Strand 3	A	57	62	anti-parallel
Strand 4	A	68	72	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	115	118	first strand
Strand 2	A	121	125	anti-parallel
Strand 3	A	676	679	parallel
Strand 4	A	172	177	parallel
Strand 5	A	453	459	parallel
Strand 6	A	243	250	anti-parallel
Strand 7	A	256	264	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	115	118	first strand
Strand 2	A	121	125	anti-parallel
Strand 3	A	676	679	parallel
Strand 4	A	172	177	parallel
Strand 5	A	672	673	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	230	231	first strand
Strand 2	A	239	240	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	362	363	first strand
Strand 2	A	370	371	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	400	403	first strand
Strand 2	A	406	409	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	563	564	first strand
Strand 2	A	575	579	anti-parallel
Strand 3	A	582	586	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	717	720	first strand
Strand 2	A	767	770	anti-parallel
Strand 3	A	761	763	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	69	70	first strand
Strand 2	B	57	62	anti-parallel
Strand 3	B	45	54	anti-parallel
Strand 4	B	35	39	anti-parallel
Strand 5	B	77	78	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	115	118	first strand
Strand 2	B	121	125	anti-parallel
Strand 3	B	672	679	parallel
Strand 4	B	172	178	parallel
Strand 5	B	453	459	parallel
Strand 6	B	243	250	anti-parallel
Strand 7	B	256	264	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	362	364	first strand
Strand 2	B	369	371	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	400	403	first strand
Strand 2	B	406	409	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	575	579	first strand
Strand 2	B	582	586	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	717	720	first strand
Strand 2	B	767	770	anti-parallel
Strand 3	B	761	762	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	26	28	first strand
Strand 2	C	64	66	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	103	105	first strand
Strand 2	C	138	140	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	47	48	first strand
Strand 2	D	80	81	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	116	118	first strand
Strand 2	D	152	154	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	47	48	first strand
Strand 2	E	80	81	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	116	117	first strand
Strand 2	E	153	154	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	26	28	first strand
Strand 2	F	64	66	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9Z40

Analysis of interatomic Contacts of Structural Units in PDB entry:
9Z40