Analysis of interatomic Contacts of Structural Units in PDB entry:
9Z4D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9Z4D entry

There are 2 chains in PDB entry 9Z4D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 13TYR 458
B
 SER 13TYR 458
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 9Z4D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
65 85Right-handed alpha
Helix 2
AA2
A
100 111Right-handed alpha
Helix 3
AA3
A
113 132Right-handed alpha
Helix 4
AA4
A
146 160Right-handed alpha
Helix 5
AA5
A
174 181Right-handed alpha
Helix 6
AA6
A
190 194Right-handed 310
Helix 7
AA7
A
245 257Right-handed alpha
Helix 8
AA8
A
268 271Right-handed 310
Helix 9
AA9
A
272 286Right-handed alpha
Helix 10
AB1
A
316 322Right-handed alpha
Helix 11
AB2
A
325 336Right-handed alpha
Helix 12
AB3
A
350 375Right-handed alpha
Helix 13
AB4
A
385 408Right-handed alpha
Helix 14
AB5
A
411 432Right-handed alpha
Helix 15
AB6
A
436 455Right-handed alpha
Helix 16
AB7
B
65 85Right-handed alpha
Helix 17
AB8
B
100 111Right-handed alpha
Helix 18
AB9
B
113 132Right-handed alpha
Helix 19
AC1
B
146 160Right-handed alpha
Helix 20
AC2
B
174 181Right-handed alpha
Helix 21
AC3
B
190 194Right-handed 310
Helix 22
AC4
B
245 257Right-handed alpha
Helix 23
AC5
B
268 271Right-handed 310
Helix 24
AC6
B
272 286Right-handed alpha
Helix 25
AC7
B
316 322Right-handed alpha
Helix 26
AC8
B
325 336Right-handed alpha
Helix 27
AC9
B
348 375Right-handed alpha
Helix 28
AD1
B
385 408Right-handed alpha
Helix 29
AD2
B
411 432Right-handed alpha
Helix 30
AD3
B
436 455Right-handed alpha
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There are 8 sheets in PDB entry 9Z4D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 34first strand
Strand 2
A
39 42anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 142first strand
Strand 2
A
89 96parallel
Strand 3
A
50 55parallel
Strand 4
A
260 266parallel
Strand 5
A
291 297parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
163 165first strand
Strand 2
A
171 173anti-parallel
Strand 3
A
221 225anti-parallel
Strand 4
A
240 242anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
305 306first strand
Strand 2
A
300 302anti-parallel
Strand 3
A
342 344parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
31 34first strand
Strand 2
B
39 42anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
139 142first strand
Strand 2
B
89 96parallel
Strand 3
B
50 55parallel
Strand 4
B
260 266parallel
Strand 5
B
291 297parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
163 165first strand
Strand 2
B
171 173anti-parallel
Strand 3
B
221 225anti-parallel
Strand 4
B
240 242anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
305 306first strand
Strand 2
B
300 302anti-parallel
Strand 3
B
342 344parallel
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