Analysis of interatomic Contacts of Structural Units in PDB entry:
9Z4Q

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9Z4Q entry

There are 6 chains in PDB entry 9Z4Q (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 33	ALA 1726
B	LYS 33	ASP 1729
C	ASP 3	GLY 151
D	THR 10	ASP 171
E	ARG 13	ASP 171
F	ASP 3	GLY 151

There are125 helices in PDB entry 9Z4Q. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	74	76	Right-handed 310
Helix 2	AA2	A	81	85	Right-handed 310
Helix 3	AA3	A	89	93	Right-handed 310
Helix 4	AA4	A	97	111	Right-handed alpha
Helix 5	AA5	A	135	143	Right-handed alpha
Helix 6	AA6	A	146	150	Right-handed 310
Helix 7	AA7	A	153	169	Right-handed alpha
Helix 8	AA8	A	183	199	Right-handed alpha
Helix 9	AA9	A	212	229	Right-handed alpha
Helix 10	AB1	A	267	272	Right-handed 310
Helix 11	AB2	A	281	291	Right-handed alpha
Helix 12	AB3	A	292	299	Right-handed alpha
Helix 13	AB4	A	303	307	Right-handed 310
Helix 14	AB5	A	321	336	Right-handed alpha
Helix 15	AB6	A	339	357	Right-handed alpha
Helix 16	AB7	A	375	386	Right-handed alpha
Helix 17	AB8	A	388	398	Right-handed alpha
Helix 18	AB9	A	413	445	Right-handed alpha
Helix 19	AC1	A	470	492	Right-handed alpha
Helix 20	AC2	A	492	502	Right-handed alpha
Helix 21	AC3	A	515	524	Right-handed alpha
Helix 22	AC4	A	530	541	Right-handed alpha
Helix 23	AC5	A	545	558	Right-handed alpha
Helix 24	AC6	A	590	597	Right-handed alpha
Helix 25	AC7	A	600	609	Right-handed alpha
Helix 26	AC8	A	612	619	Right-handed alpha
Helix 27	AC9	A	652	669	Right-handed alpha
Helix 28	AD1	A	691	702	Right-handed alpha
Helix 29	AD2	A	703	714	Right-handed alpha
Helix 30	AD3	A	721	728	Right-handed alpha
Helix 31	AD4	A	729	732	Right-handed 310
Helix 32	AD5	A	742	754	Right-handed alpha
Helix 33	AD6	A	757	759	Right-handed 310
Helix 34	AD7	A	773	822	Right-handed alpha
Helix 35	AD8	A	823	828	Right-handed alpha
Helix 36	AD9	A	837	1011	Right-handed alpha
Helix 37	AE1	A	1312	1523	Right-handed alpha
Helix 38	AE2	A	1534	1725	Right-handed alpha
Helix 39	AE3	B	73	76	Right-handed 310
Helix 40	AE4	B	81	85	Right-handed 310
Helix 41	AE5	B	89	93	Right-handed 310
Helix 42	AE6	B	97	110	Right-handed alpha
Helix 43	AE7	B	135	143	Right-handed alpha
Helix 44	AE8	B	146	150	Right-handed 310
Helix 45	AE9	B	153	169	Right-handed alpha
Helix 46	AF1	B	183	199	Right-handed alpha
Helix 47	AF2	B	200	202	Right-handed 310
Helix 48	AF3	B	212	217	Right-handed alpha
Helix 49	AF4	B	218	220	Right-handed 310
Helix 50	AF5	B	221	227	Right-handed alpha
Helix 51	AF6	B	267	272	Right-handed 310
Helix 52	AF7	B	281	291	Right-handed alpha
Helix 53	AF8	B	292	299	Right-handed alpha
Helix 54	AF9	B	321	336	Right-handed alpha
Helix 55	AG1	B	339	357	Right-handed alpha
Helix 56	AG2	B	375	386	Right-handed alpha
Helix 57	AG3	B	388	398	Right-handed alpha
Helix 58	AG4	B	413	444	Right-handed alpha
Helix 59	AG5	B	470	493	Right-handed alpha
Helix 60	AG6	B	493	502	Right-handed alpha
Helix 61	AG7	B	515	524	Right-handed alpha
Helix 62	AG8	B	530	539	Right-handed alpha
Helix 63	AG9	B	545	557	Right-handed alpha
Helix 64	AH1	B	590	597	Right-handed alpha
Helix 65	AH2	B	600	609	Right-handed alpha
Helix 66	AH3	B	612	619	Right-handed alpha
Helix 67	AH4	B	621	625	Right-handed 310
Helix 68	AH5	B	652	669	Right-handed alpha
Helix 69	AH6	B	691	702	Right-handed alpha
Helix 70	AH7	B	703	714	Right-handed alpha
Helix 71	AH8	B	723	727	Right-handed 310
Helix 72	AH9	B	728	732	Right-handed 310
Helix 73	AI1	B	744	754	Right-handed alpha
Helix 74	AI2	B	757	759	Right-handed 310
Helix 75	AI3	B	773	822	Right-handed alpha
Helix 76	AI4	B	823	828	Right-handed alpha
Helix 77	AI5	B	831	841	Right-handed alpha
Helix 78	AI6	B	842	845	Right-handed 310
Helix 79	AI7	B	847	852	Right-handed alpha
Helix 80	AI8	B	855	1013	Right-handed alpha
Helix 81	AI9	B	1312	1451	Right-handed alpha
Helix 82	AJ1	B	1452	1523	Right-handed alpha
Helix 83	AJ2	B	1523	1528	Right-handed alpha
Helix 84	AJ3	B	1533	1603	Right-handed alpha
Helix 85	AJ4	B	1604	1630	Right-handed alpha
Helix 86	AJ5	B	1630	1727	Right-handed alpha
Helix 87	AJ6	C	5	20	Right-handed alpha
Helix 88	AJ7	C	29	39	Right-handed alpha
Helix 89	AJ8	C	44	52	Right-handed alpha
Helix 90	AJ9	C	56	61	Right-handed alpha
Helix 91	AK1	C	66	79	Right-handed alpha
Helix 92	AK2	C	85	95	Right-handed alpha
Helix 93	AK3	C	106	114	Right-handed alpha
Helix 94	AK4	C	121	130	Right-handed alpha
Helix 95	AK5	C	141	150	Right-handed alpha
Helix 96	AK6	D	20	25	Right-handed 310
Helix 97	AK7	D	26	41	Right-handed alpha
Helix 98	AK8	D	49	59	Right-handed alpha
Helix 99	AK9	D	65	74	Right-handed alpha
Helix 100	AL1	D	82	91	Right-handed alpha
Helix 101	AL2	D	98	108	Right-handed alpha
Helix 102	AL3	D	119	129	Right-handed alpha
Helix 103	AL4	D	134	144	Right-handed alpha
Helix 104	AL5	D	155	164	Right-handed alpha
Helix 105	AL6	E	18	23	Right-handed alpha
Helix 106	AL7	E	26	41	Right-handed alpha
Helix 107	AL8	E	49	59	Right-handed alpha
Helix 108	AL9	E	65	76	Right-handed alpha
Helix 109	AM1	E	82	94	Right-handed alpha
Helix 110	AM2	E	98	105	Right-handed alpha
Helix 111	AM3	E	106	110	Right-handed 310
Helix 112	AM4	E	118	127	Right-handed alpha
Helix 113	AM5	E	134	144	Right-handed alpha
Helix 114	AM6	E	155	165	Right-handed alpha
Helix 115	AM7	F	5	17	Right-handed alpha
Helix 116	AM8	F	18	20	Right-handed 310
Helix 117	AM9	F	31	39	Right-handed alpha
Helix 118	AN1	F	44	52	Right-handed alpha
Helix 119	AN2	F	56	61	Right-handed alpha
Helix 120	AN3	F	66	69	Right-handed 310
Helix 121	AN4	F	70	78	Right-handed alpha
Helix 122	AN5	F	85	93	Right-handed alpha
Helix 123	AN6	F	106	114	Right-handed alpha
Helix 124	AN7	F	121	130	Right-handed alpha
Helix 125	AN8	F	140	149	Right-handed alpha

There are 21 sheets in PDB entry 9Z4Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	40	first strand
Strand 2	A	44	54	anti-parallel
Strand 3	A	57	62	anti-parallel
Strand 4	A	68	72	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	115	118	first strand
Strand 2	A	121	125	anti-parallel
Strand 3	A	672	679	parallel
Strand 4	A	172	178	parallel
Strand 5	A	453	459	parallel
Strand 6	A	243	250	anti-parallel
Strand 7	A	256	264	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	230	231	first strand
Strand 2	A	239	240	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	362	363	first strand
Strand 2	A	370	371	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	400	403	first strand
Strand 2	A	406	409	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	563	564	first strand
Strand 2	A	575	579	anti-parallel
Strand 3	A	582	586	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	717	720	first strand
Strand 2	A	767	770	anti-parallel
Strand 3	A	761	763	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	70	71	first strand
Strand 2	B	57	60	anti-parallel
Strand 3	B	45	54	anti-parallel
Strand 4	B	35	39	anti-parallel
Strand 5	B	77	78	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	115	118	first strand
Strand 2	B	121	125	anti-parallel
Strand 3	B	672	679	parallel
Strand 4	B	172	177	parallel
Strand 5	B	454	459	parallel
Strand 6	B	243	250	anti-parallel
Strand 7	B	256	264	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	362	364	first strand
Strand 2	B	369	371	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	400	403	first strand
Strand 2	B	406	409	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	575	579	first strand
Strand 2	B	582	586	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	717	720	first strand
Strand 2	B	767	770	anti-parallel
Strand 3	B	761	763	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	28	first strand
Strand 2	C	64	65	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	103	105	first strand
Strand 2	C	138	140	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	47	48	first strand
Strand 2	D	80	81	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	116	118	first strand
Strand 2	D	152	154	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	47	48	first strand
Strand 2	E	80	81	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	116	117	first strand
Strand 2	E	153	154	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	27	28	first strand
Strand 2	F	64	65	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	104	105	first strand
Strand 2	F	138	139	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9Z4Q

Analysis of interatomic Contacts of Structural Units in PDB entry:
9Z4Q