Analysis of interatomic Contacts of Structural Units in PDB entry:
9Z5Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9Z5Q entry

There are 2 chains in PDB entry 9Z5Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 1SER 122
B
 ASN 545ALA 968
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 9Z5Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
86 90Right-handed 310
Helix 2
AA2
B
596 607Right-handed alpha
Helix 3
AA3
B
623 625Right-handed 310
Helix 4
AA4
B
626 637Right-handed alpha
Helix 5
AA5
B
640 645Right-handed alpha
Helix 6
AA6
B
654 656Right-handed 310
Helix 7
AA7
B
662 676Right-handed alpha
Helix 8
AA8
B
677 681Right-handed 310
Helix 9
AA9
B
698 703Right-handed alpha
Helix 10
AB1
B
705 724Right-handed alpha
Helix 11
AB2
B
732 741Right-handed alpha
Helix 12
AB3
B
748 753Right-handed alpha
Helix 13
AB4
B
753 766Right-handed alpha
Helix 14
AB5
B
803 816Right-handed alpha
Helix 15
AB6
B
816 833Right-handed alpha
Helix 16
AB7
B
836 841Right-handed alpha
Helix 17
AB8
B
844 854Right-handed alpha
Helix 18
AB9
B
859 866Right-handed alpha
Helix 19
AC1
B
877 890Right-handed alpha
Helix 20
AC2
B
891 903Right-handed alpha
Helix 21
AC3
B
953 967Right-handed alpha
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There are 9 sheets in PDB entry 9Z5Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 7first strand
Strand 2
A
18 26anti-parallel
Strand 3
A
77 82anti-parallel
Strand 4
A
67 72anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 13first strand
Strand 2
A
120 121parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 59first strand
Strand 2
A
45 50anti-parallel
Strand 3
A
31 39anti-parallel
Strand 4
A
92 102anti-parallel
Strand 5
A
106 112anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 59first strand
Strand 2
A
45 50anti-parallel
Strand 3
A
31 39anti-parallel
Strand 4
A
92 102anti-parallel
Strand 5
A
116 117anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
554 558first strand
Strand 2
B
564 568anti-parallel
Strand 3
B
573 575anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
617 622first strand
Strand 2
B
647 652parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
683 685first strand
Strand 2
B
693 695anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
776 779first strand
Strand 2
B
786 789anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
867 870first strand
Strand 2
B
925 929parallel
Strand 3
B
945 948parallel
Strand 4
B
938 940anti-parallel
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