Analysis of interatomic Contacts of Structural Units in PDB entry:
9Z5U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9Z5U entry

There are 3 chains in PDB entry 9Z5U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 424TRP 646
H
 LEU 4VAL 111
L
 GLU 1GLU 105
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 9Z5U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
452 458Right-handed alpha
Helix 2
AA2
A
500 502Right-handed 310
Helix 3
AA3
A
593 598Right-handed alpha
Helix 4
AA4
A
613 618Right-handed alpha
Helix 5
AA5
A
619 622Right-handed 310
Helix 6
AA6
H
62 64Right-handed 310
Helix 7
AA7
H
83 87Right-handed 310
Helix 8
AA8
L
79 83Right-handed 310
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There are 10 sheets in PDB entry 9Z5U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
473 474first strand
Strand 2
A
569 572anti-parallel
Strand 3
A
579 581anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
497 498first strand
Strand 2
A
536 537anti-parallel
Strand 3
A
518 519anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
513 515first strand
Strand 2
A
507 509anti-parallel
Strand 3
A
551 555anti-parallel
Strand 4
A
561 565anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
607 610first strand
Strand 2
A
641 644anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
636 638first strand
Strand 2
H
56 60anti-parallel
Strand 3
H
45 52anti-parallel
Strand 4
H
32 39anti-parallel
Strand 5
H
88 91anti-parallel
Strand 6
H
107 110anti-parallel
Strand 7
H
10 11parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
636 638first strand
Strand 2
H
56 60anti-parallel
Strand 3
H
45 52anti-parallel
Strand 4
H
32 39anti-parallel
Strand 5
H
93 96anti-parallel
Strand 6
H
100 103anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
5 6first strand
Strand 2
H
18 23anti-parallel
Strand 3
H
77 82anti-parallel
Strand 4
H
67 71anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
4 5first strand
Strand 2
L
19 25anti-parallel
Strand 3
L
70 75anti-parallel
Strand 4
L
62 63anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 11first strand
Strand 2
L
102 104parallel
Strand 3
L
85 86anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
53 54first strand
Strand 2
L
45 49anti-parallel
Strand 3
L
33 37anti-parallel
Strand 4
L
88 90anti-parallel
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