Analysis of interatomic Contacts of Structural Units in PDB entry:
9Z6E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9Z6E entry

There are 2 chains in PDB entry 9Z6E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 331PRO 640
B
 ARG 329ARG 633
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 9Z6E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
335 337Right-handed 310
Helix 2
AA2
A
374 391Right-handed alpha
Helix 3
AA3
A
420 427Right-handed alpha
Helix 4
AA4
A
433 454Right-handed alpha
Helix 5
AA5
A
517 522Right-handed alpha
Helix 6
AA6
A
528 545Right-handed alpha
Helix 7
AA7
A
562 570Right-handed alpha
Helix 8
AA8
A
578 587Right-handed alpha
Helix 9
AA9
A
590 594Right-handed 310
Helix 10
AB1
A
596 613Right-handed alpha
Helix 11
AB2
A
617 633Right-handed alpha
Helix 12
AB3
B
374 389Right-handed alpha
Helix 13
AB4
B
420 427Right-handed alpha
Helix 14
AB5
B
433 454Right-handed alpha
Helix 15
AB6
B
512 516Right-handed 310
Helix 16
AB7
B
517 522Right-handed alpha
Helix 17
AB8
B
528 545Right-handed alpha
Helix 18
AB9
B
562 570Right-handed alpha
Helix 19
AC1
B
578 587Right-handed alpha
Helix 20
AC2
B
590 594Right-handed 310
Helix 21
AC3
B
596 614Right-handed alpha
Helix 22
AC4
B
617 632Right-handed alpha
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There are 6 sheets in PDB entry 9Z6E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
332 334first strand
Strand 2
A
399 403parallel
Strand 3
A
410 414anti-parallel
Strand 4
A
364 369anti-parallel
Strand 5
A
351 358anti-parallel
Strand 6
A
339 348anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
456 457first strand
Strand 2
A
483 484anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
466 468first strand
Strand 2
A
474 476anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
332 333first strand
Strand 2
B
399 402parallel
Strand 3
B
410 414anti-parallel
Strand 4
B
365 369anti-parallel
Strand 5
B
353 356anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
456 457first strand
Strand 2
B
483 484anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
466 468first strand
Strand 2
B
474 476anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il