Analysis of interatomic Contacts of Structural Units in PDB entry:
9Z79


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9Z79 entry

There are 3 chains in PDB entry 9Z79 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1ASN 891
B
 GLN 1VAL 218
C
 GLU 1ARG 212
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 9Z79. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 17Right-handed alpha
Helix 2
AA2
A
49 53Right-handed 310
Helix 3
AA3
A
196 200Right-handed 310
Helix 4
AA4
A
245 250Right-handed alpha
Helix 5
AA5
A
252 257Right-handed 310
Helix 6
AA6
A
299 303Right-handed 310
Helix 7
AA7
A
432 434Right-handed 310
Helix 8
AA8
B
63 66Right-handed 310
Helix 9
AA9
B
88 92Right-handed 310
Helix 10
AB1
B
163 165Right-handed 310
Helix 11
AB2
C
79 83Right-handed 310
Helix 12
AB3
C
122 127Right-handed alpha
Helix 13
AB4
C
184 190Right-handed alpha
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There are 24 sheets in PDB entry 9Z79. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 4first strand
Strand 2
A
151 154parallel
Strand 3
A
160 163anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 32first strand
Strand 2
A
38 42anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 67first strand
Strand 2
A
72 75anti-parallel
Strand 3
A
108 112anti-parallel
Strand 4
A
93 101anti-parallel
Strand 5
A
84 86anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
171 175first strand
Strand 2
A
140 147anti-parallel
Strand 3
A
214 219anti-parallel
Strand 4
A
225 235anti-parallel
Strand 5
A
238 243anti-parallel
Strand 6
A
186 189anti-parallel
Strand 7
A
179 181anti-parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
261 262first strand
Strand 2
A
306 309parallel
Strand 3
A
328 330parallel
Strand 4
A
349 351parallel
Strand 5
A
368 372parallel
Strand 6
A
388 398parallel
Strand 7
A
414 425parallel
Strand 8
A
436 438parallel
Strand 9
A
458 459parallel
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There are 21 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
288 293first strand
Strand 2
A
280 285anti-parallel
Strand 3
A
270 274anti-parallel
Strand 4
A
313 317parallel
Strand 5
A
334 338parallel
Strand 6
A
356 360parallel
Strand 7
A
376 379parallel
Strand 8
A
388 398parallel
Strand 9
A
414 425parallel
Strand 10
A
443 446parallel
Strand 11
A
464 467parallel
Strand 12
A
568 570parallel
Strand 13
A
591 593parallel
Strand 14
A
630 633parallel
Strand 15
A
650 653parallel
Strand 16
A
700 702parallel
Strand 17
A
718 720parallel
Strand 18
A
737 739parallel
Strand 19
A
757 760parallel
Strand 20
A
777 780parallel
Strand 21
A
809 812parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
321 322first strand
Strand 2
A
344 345parallel
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There are 10 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
452 454first strand
Strand 2
A
474 478parallel
Strand 3
A
573 577parallel
Strand 4
A
598 602parallel
Strand 5
A
636 640parallel
Strand 6
A
656 659parallel
Strand 7
A
705 708parallel
Strand 8
A
723 726parallel
Strand 9
A
743 746parallel
Strand 10
A
764 765parallel
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There are 12 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
563 565first strand
Strand 2
A
585 588parallel
Strand 3
A
605 608parallel
Strand 4
A
643 646parallel
Strand 5
A
663 666parallel
Strand 6
A
712 715parallel
Strand 7
A
729 732parallel
Strand 8
A
749 752parallel
Strand 9
A
769 772parallel
Strand 10
A
795 804parallel
Strand 11
A
816 823parallel
Strand 12
A
863 864parallel
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There are 13 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
563 565first strand
Strand 2
A
585 588parallel
Strand 3
A
605 608parallel
Strand 4
A
643 646parallel
Strand 5
A
663 666parallel
Strand 6
A
712 715parallel
Strand 7
A
729 732parallel
Strand 8
A
749 752parallel
Strand 9
A
769 772parallel
Strand 10
A
795 804parallel
Strand 11
A
816 823parallel
Strand 12
A
858 860parallel
Strand 13
A
876 878parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
611 612first strand
Strand 2
A
627 628anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
670 674first strand
Strand 2
A
685 689anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
869 871first strand
Strand 2
A
887 889parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 7first strand
Strand 2
B
18 25anti-parallel
Strand 3
B
79 84anti-parallel
Strand 4
B
69 74anti-parallel
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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 12first strand
Strand 2
B
114 118parallel
Strand 3
B
93 101anti-parallel
Strand 4
B
34 41anti-parallel
Strand 5
B
48 53anti-parallel
Strand 6
B
59 61anti-parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 12first strand
Strand 2
B
114 118parallel
Strand 3
B
93 101anti-parallel
Strand 4
B
109 110anti-parallel
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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
127 131first strand
Strand 2
B
143 152anti-parallel
Strand 3
B
183 191anti-parallel
Strand 4
B
171 172anti-parallel
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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
127 131first strand
Strand 2
B
143 152anti-parallel
Strand 3
B
183 191anti-parallel
Strand 4
B
176 177anti-parallel
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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
158 161first strand
Strand 2
B
202 207anti-parallel
Strand 3
B
212 217anti-parallel
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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
4 7first strand
Strand 2
C
19 25anti-parallel
Strand 3
C
70 75anti-parallel
Strand 4
C
62 67anti-parallel
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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 13first strand
Strand 2
C
103 107parallel
Strand 3
C
84 90anti-parallel
Strand 4
C
33 38anti-parallel
Strand 5
C
45 49anti-parallel
Strand 6
C
53 54anti-parallel
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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 13first strand
Strand 2
C
103 107parallel
Strand 3
C
84 90anti-parallel
Strand 4
C
98 99anti-parallel
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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
115 119first strand
Strand 2
C
130 140anti-parallel
Strand 3
C
174 183anti-parallel
Strand 4
C
160 164anti-parallel
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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
146 150first strand
Strand 2
C
194 198anti-parallel
Strand 3
C
206 209anti-parallel
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