Analysis of interatomic Contacts of Structural Units in PDB entry:
9Z7V

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9Z7V entry

There are 11 chains in PDB entry 9Z7V (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LYS 592
B	MET 1	GLU 360
C	MET 1	LEU 315
D	MET 1	LEU 315
E	MET 1	LEU 315
F	ASN 4	GLU 137
G	THR 7	GLU 137
H	ASP 79	THR 376
J	U 1	U 36
N	A 1	A 38
I	MET 1	MET 350

There are 89 helices in PDB entry 9Z7V. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	14	20	Right-handed alpha
Helix 2	AA2	A	23	49	Right-handed alpha
Helix 3	AA3	A	74	76	Right-handed 310
Helix 4	AA4	A	77	105	Right-handed alpha
Helix 5	AA5	A	111	118	Right-handed alpha
Helix 6	AA6	A	133	149	Right-handed alpha
Helix 7	AA7	A	185	193	Right-handed alpha
Helix 8	AA8	A	222	230	Right-handed alpha
Helix 9	AA9	A	231	235	Right-handed 310
Helix 10	AB1	A	248	250	Right-handed 310
Helix 11	AB2	A	251	262	Right-handed alpha
Helix 12	AB3	A	263	271	Right-handed alpha
Helix 13	AB4	A	275	284	Right-handed alpha
Helix 14	AB5	A	296	312	Right-handed alpha
Helix 15	AB6	A	329	336	Right-handed alpha
Helix 16	AB7	A	343	363	Right-handed alpha
Helix 17	AB8	A	389	405	Right-handed alpha
Helix 18	AB9	A	407	412	Right-handed 310
Helix 19	AC1	A	434	450	Right-handed alpha
Helix 20	AC2	A	483	497	Right-handed alpha
Helix 21	AC3	A	502	512	Right-handed alpha
Helix 22	AC4	A	513	516	Right-handed 310
Helix 23	AC5	A	524	538	Right-handed alpha
Helix 24	AC6	A	547	563	Right-handed alpha
Helix 25	AC7	A	563	570	Right-handed alpha
Helix 26	AC8	A	573	591	Right-handed alpha
Helix 27	AC9	B	35	50	Right-handed alpha
Helix 28	AD1	B	51	58	Right-handed 310
Helix 29	AD2	B	143	150	Right-handed alpha
Helix 30	AD3	B	327	334	Right-handed alpha
Helix 31	AD4	B	343	350	Right-handed alpha
Helix 32	AD5	C	43	58	Right-handed alpha
Helix 33	AD6	C	73	81	Right-handed alpha
Helix 34	AD7	C	117	132	Right-handed alpha
Helix 35	AD8	C	175	189	Right-handed alpha
Helix 36	AD9	C	196	205	Right-handed alpha
Helix 37	AE1	C	271	275	Right-handed 310
Helix 38	AE2	C	280	293	Right-handed alpha
Helix 39	AE3	D	43	58	Right-handed alpha
Helix 40	AE4	D	73	81	Right-handed alpha
Helix 41	AE5	D	117	131	Right-handed alpha
Helix 42	AE6	D	175	189	Right-handed alpha
Helix 43	AE7	D	196	203	Right-handed alpha
Helix 44	AE8	D	210	221	Right-handed alpha
Helix 45	AE9	D	267	275	Right-handed 310
Helix 46	AF1	D	280	293	Right-handed alpha
Helix 47	AF2	E	43	57	Right-handed alpha
Helix 48	AF3	E	73	81	Right-handed alpha
Helix 49	AF4	E	117	131	Right-handed alpha
Helix 50	AF5	E	175	189	Right-handed alpha
Helix 51	AF6	E	195	200	Right-handed alpha
Helix 52	AF7	E	210	221	Right-handed alpha
Helix 53	AF8	E	267	275	Right-handed 310
Helix 54	AF9	E	280	293	Right-handed alpha
Helix 55	AG1	F	7	29	Right-handed alpha
Helix 56	AG2	F	32	41	Right-handed alpha
Helix 57	AG3	F	42	51	Right-handed alpha
Helix 58	AG4	F	51	62	Right-handed alpha
Helix 59	AG5	F	71	86	Right-handed alpha
Helix 60	AG6	F	93	98	Right-handed alpha
Helix 61	AG7	F	101	107	Right-handed alpha
Helix 62	AG8	F	110	136	Right-handed alpha
Helix 63	AG9	G	12	25	Right-handed alpha
Helix 64	AH1	G	32	41	Right-handed alpha
Helix 65	AH2	G	44	49	Right-handed alpha
Helix 66	AH3	G	52	63	Right-handed alpha
Helix 67	AH4	G	71	86	Right-handed alpha
Helix 68	AH5	G	95	99	Right-handed 310
Helix 69	AH6	G	101	109	Right-handed alpha
Helix 70	AH7	G	110	136	Right-handed alpha
Helix 71	AH8	H	103	110	Right-handed alpha
Helix 72	AH9	H	134	138	Right-handed alpha
Helix 73	AI1	H	141	161	Right-handed alpha
Helix 74	AI2	H	202	220	Right-handed alpha
Helix 75	AI3	H	222	227	Right-handed alpha
Helix 76	AI4	H	229	237	Right-handed alpha
Helix 77	AI5	H	320	325	Right-handed alpha
Helix 78	AI6	H	330	336	Right-handed alpha
Helix 79	AI7	H	344	360	Right-handed alpha
Helix 80	AI8	I	27	44	Right-handed alpha
Helix 81	AI9	I	47	60	Right-handed alpha
Helix 82	AJ1	I	94	99	Right-handed alpha
Helix 83	AJ2	I	99	105	Right-handed alpha
Helix 84	AJ3	I	129	145	Right-handed alpha
Helix 85	AJ4	I	168	172	Right-handed 310
Helix 86	AJ5	I	183	203	Right-handed alpha
Helix 87	AJ6	I	230	238	Right-handed alpha
Helix 88	AJ7	I	239	247	Right-handed alpha
Helix 89	AJ8	I	330	341	Right-handed alpha

There are 36 sheets in PDB entry 9Z7V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	51	55	first strand
Strand 2	A	67	72	anti-parallel
Strand 3	A	4	12	anti-parallel
Strand 4	A	121	128	anti-parallel
Strand 5	B	116	117	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	200	202	first strand
Strand 2	A	176	178	parallel
Strand 3	A	220	221	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	371	376	first strand
Strand 2	A	380	386	anti-parallel
Strand 3	A	319	327	anti-parallel
Strand 4	A	422	430	anti-parallel
Strand 5	A	458	464	parallel
Strand 6	A	470	476	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	160	161	first strand
Strand 2	B	139	142	anti-parallel
Strand 3	B	85	89	anti-parallel
Strand 4	B	74	82	anti-parallel
Strand 5	B	199	206	anti-parallel
Strand 6	B	2	8	anti-parallel
Strand 7	B	223	231	anti-parallel
Strand 8	B	213	218	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	12	13	first strand
Strand 2	B	193	196	anti-parallel
Strand 3	B	166	168	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	105	106	first strand
Strand 2	B	95	97	anti-parallel
Strand 3	B	133	134	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	109	111	first strand
Strand 2	B	124	126	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	171	176	first strand
Strand 2	B	183	191	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	275	278	first strand
Strand 2	B	281	289	anti-parallel
Strand 3	B	317	322	anti-parallel
Strand 4	B	249	254	anti-parallel
Strand 5	B	353	358	anti-parallel
Strand 6	B	338	339	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	294	296	first strand
Strand 2	B	309	311	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	299	300	first strand
Strand 2	B	304	305	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	93	95	first strand
Strand 2	C	253	260	anti-parallel
Strand 3	C	99	106	anti-parallel
Strand 4	C	112	116	anti-parallel
Strand 5	C	206	208	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	93	95	first strand
Strand 2	C	253	260	anti-parallel
Strand 3	C	4	12	anti-parallel
Strand 4	C	309	314	anti-parallel
Strand 5	C	296	298	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	61	64	first strand
Strand 2	C	67	70	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	144	145	first strand
Strand 2	C	168	169	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	157	160	first strand
Strand 2	C	163	166	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	223	230	first strand
Strand 2	C	237	247	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	41	42	first strand
Strand 2	D	98	106	anti-parallel
Strand 3	D	253	260	anti-parallel
Strand 4	D	112	116	first strand
Strand 5	D	206	208	parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	93	95	first strand
Strand 2	D	253	260	anti-parallel
Strand 3	D	98	106	anti-parallel
Strand 4	D	4	12	first strand
Strand 5	D	309	314	anti-parallel
Strand 6	D	296	298	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	61	64	first strand
Strand 2	D	67	70	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	144	145	first strand
Strand 2	D	168	169	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	157	159	first strand
Strand 2	D	164	166	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	223	230	first strand
Strand 2	D	237	247	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	41	42	first strand
Strand 2	E	98	106	anti-parallel
Strand 3	E	253	260	anti-parallel
Strand 4	E	112	116	first strand
Strand 5	E	206	208	parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	93	95	first strand
Strand 2	E	253	260	anti-parallel
Strand 3	E	98	106	anti-parallel
Strand 4	E	4	12	first strand
Strand 5	E	309	314	anti-parallel
Strand 6	E	296	298	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	61	64	first strand
Strand 2	E	67	70	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	144	145	first strand
Strand 2	E	168	169	parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	157	160	first strand
Strand 2	E	163	166	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	223	231	first strand
Strand 2	E	236	247	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	122	124	first strand
Strand 2	H	130	133	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	251	253	first strand
Strand 2	H	309	315	anti-parallel
Strand 3	H	165	172	anti-parallel
Strand 4	H	373	374	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	264	269	first strand
Strand 2	H	298	303	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	71	77	first strand
Strand 2	I	118	125	anti-parallel
Strand 3	I	2	10	anti-parallel
Strand 4	I	158	163	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	289	296	first strand
Strand 2	I	299	308	anti-parallel
Strand 3	I	215	224	anti-parallel
Strand 4	I	343	349	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	261	263	first strand
Strand 2	I	271	277	anti-parallel
Strand 3	I	280	282	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	261	263	first strand
Strand 2	I	271	277	anti-parallel
Strand 3	I	317	319	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9Z7V

Analysis of interatomic Contacts of Structural Units in PDB entry:
9Z7V