Analysis of interatomic Contacts of Structural Units in PDB entry:
9Z80

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9Z80 entry

There are 5 chains in PDB entry 9Z80 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	UNK 1	UNK 119
B	UNK 2	UNK 103
C	VAL 705	PRO 1143
D	ALA 706	GLN 1142
E	CYS 704	GLU 1144

There are 39 helices in PDB entry 9Z80. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	737	743	Right-handed alpha
Helix 2	AA2	C	748	782	Right-handed alpha
Helix 3	AA3	C	816	823	Right-handed alpha
Helix 4	AA4	C	833	841	Right-handed alpha
Helix 5	AA5	C	847	855	Right-handed alpha
Helix 6	AA6	C	866	885	Right-handed alpha
Helix 7	AA7	C	886	889	Right-handed 310
Helix 8	AA8	C	897	910	Right-handed alpha
Helix 9	AA9	C	913	919	Right-handed alpha
Helix 10	AB1	C	919	936	Right-handed alpha
Helix 11	AB2	C	945	966	Right-handed alpha
Helix 12	AB3	C	976	982	Right-handed alpha
Helix 13	AB4	C	989	1032	Right-handed alpha
Helix 14	AB5	D	738	743	Right-handed alpha
Helix 15	AB6	D	746	754	Right-handed alpha
Helix 16	AB7	D	755	757	Right-handed 310
Helix 17	AB8	D	758	782	Right-handed alpha
Helix 18	AB9	D	816	826	Right-handed alpha
Helix 19	AC1	D	834	841	Right-handed alpha
Helix 20	AC2	D	849	855	Right-handed alpha
Helix 21	AC3	D	866	885	Right-handed alpha
Helix 22	AC4	D	897	910	Right-handed alpha
Helix 23	AC5	D	913	936	Right-handed alpha
Helix 24	AC6	D	945	965	Right-handed alpha
Helix 25	AC7	D	993	998	Right-handed alpha
Helix 26	AC8	D	999	1032	Right-handed alpha
Helix 27	AC9	E	737	743	Right-handed alpha
Helix 28	AD1	E	749	755	Right-handed alpha
Helix 29	AD2	E	758	782	Right-handed alpha
Helix 30	AD3	E	816	824	Right-handed alpha
Helix 31	AD4	E	833	840	Right-handed alpha
Helix 32	AD5	E	851	855	Right-handed alpha
Helix 33	AD6	E	866	884	Right-handed alpha
Helix 34	AD7	E	897	909	Right-handed alpha
Helix 35	AD8	E	913	918	Right-handed alpha
Helix 36	AD9	E	919	937	Right-handed alpha
Helix 37	AE1	E	945	966	Right-handed alpha
Helix 38	AE2	E	976	984	Right-handed alpha
Helix 39	AE3	E	985	1032	Right-handed alpha

There are 12 sheets in PDB entry 9Z80. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	711	728	first strand
Strand 2	C	1059	1078	anti-parallel
Strand 3	C	1047	1056	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	711	728	first strand
Strand 2	C	1059	1078	anti-parallel
Strand 3	C	1094	1097	anti-parallel
Strand 4	C	1102	1105	anti-parallel
Strand 5	C	1113	1114	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	733	736	first strand
Strand 2	C	858	861	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1120	1122	first strand
Strand 2	C	1086	1090	anti-parallel
Strand 3	C	1081	1083	anti-parallel
Strand 4	C	1133	1134	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	711	728	first strand
Strand 2	D	1059	1078	anti-parallel
Strand 3	D	1047	1056	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	711	728	first strand
Strand 2	D	1059	1078	anti-parallel
Strand 3	D	1094	1097	anti-parallel
Strand 4	D	1102	1105	anti-parallel
Strand 5	D	1113	1114	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	734	736	first strand
Strand 2	D	858	860	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1120	1122	first strand
Strand 2	D	1086	1090	anti-parallel
Strand 3	D	1081	1083	anti-parallel
Strand 4	D	1133	1134	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	711	728	first strand
Strand 2	E	1059	1078	anti-parallel
Strand 3	E	1047	1056	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	711	728	first strand
Strand 2	E	1059	1078	anti-parallel
Strand 3	E	1094	1097	anti-parallel
Strand 4	E	1102	1105	anti-parallel
Strand 5	E	1113	1114	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	734	736	first strand
Strand 2	E	858	860	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1120	1125	first strand
Strand 2	E	1086	1090	anti-parallel
Strand 3	E	1081	1082	anti-parallel
Strand 4	E	1133	1134	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9Z80

Analysis of interatomic Contacts of Structural Units in PDB entry:
9Z80