Analysis of interatomic Contacts of Structural Units in PDB entry:
9Z8K


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9Z8K entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 3 chains in PDB entry 9Z8K (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 53GLY 70
A
 PHE 72PRO 348
B
 MET 53ALA 347
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 9Z8K. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
57 59Right-handed 310
Helix 2
AA2
A
94 100Right-handed alpha
Helix 3
AA3
A
102 112Right-handed alpha
Helix 4
AA4
A
112 117Right-handed alpha
Helix 5
AA5
A
145 152Right-handed alpha
Helix 6
AA6
A
153 157Right-handed 310
Helix 7
AA7
A
159 180Right-handed alpha
Helix 8
AA8
A
188 190Right-handed 310
Helix 9
AA9
A
233 237Right-handed alpha
Helix 10
AB1
A
238 245Right-handed alpha
Helix 11
AB2
A
248 266Right-handed alpha
Helix 12
AB3
A
274 285Right-handed alpha
Helix 13
AB4
A
296 307Right-handed alpha
Helix 14
AB5
A
310 314Right-handed 310
Helix 15
AB6
A
316 322Right-handed alpha
Helix 16
AB7
A
323 327Right-handed 310
Helix 17
AB8
A
330 336Right-handed alpha
Helix 18
AB9
B
57 59Right-handed 310
Helix 19
AC1
B
95 98Right-handed 310
Helix 20
AC2
B
99 112Right-handed alpha
Helix 21
AC3
B
113 116Right-handed 310
Helix 22
AC4
B
145 151Right-handed alpha
Helix 23
AC5
B
153 157Right-handed 310
Helix 24
AC6
B
159 180Right-handed alpha
Helix 25
AC7
B
188 190Right-handed 310
Helix 26
AC8
B
232 237Right-handed 310
Helix 27
AC9
B
238 245Right-handed alpha
Helix 28
AD1
B
249 266Right-handed alpha
Helix 29
AD2
B
274 285Right-handed alpha
Helix 30
AD3
B
296 307Right-handed alpha
Helix 31
AD4
B
310 314Right-handed 310
Helix 32
AD5
B
316 322Right-handed alpha
Helix 33
AD6
B
323 327Right-handed 310
Helix 34
AD7
B
330 336Right-handed alpha
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There are 4 sheets in PDB entry 9Z8K. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 69first strand
Strand 2
A
73 80anti-parallel
Strand 3
A
86 93anti-parallel
Strand 4
A
133 138anti-parallel
Strand 5
A
124 129anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
192 194first strand
Strand 2
A
200 202anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 69first strand
Strand 2
B
73 80anti-parallel
Strand 3
B
86 93anti-parallel
Strand 4
B
133 138anti-parallel
Strand 5
B
124 129anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
192 194first strand
Strand 2
B
200 202anti-parallel
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