Analysis of interatomic Contacts of Structural Units in PDB entry:
9ZB4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9ZB4 entry

There are 48 chains in PDB entry 9ZB4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
o	GLY 5	ASP 59
x	VAL 1	SER 76
c	VAL 1	SER 76
p	VAL 1	SER 76
q	VAL 1	SER 76
r	VAL 1	SER 76
s	VAL 1	SER 76
y	VAL 1	SER 76
u	VAL 1	SER 76
v	VAL 1	SER 76
w	VAL 1	SER 76
l	MET 1	PHE 231
b	VAL 2	ILE 103
d	MET 1	ALA 384
h	VAL 38	LEU 200
i	MET 26	TYR 152
e	PHE 4	GLY 126
j	GLU 39	TRP 104
k	PHE 30	ILE 104
m	LYS 61	GLN 119
g	LEU 96	ALA 199
a	MET 1	ALA 99
f	ASN 20	LYS 155
n	VAL 64	ARG 141
L	MET 1	PHE 231
B	VAL 2	ILE 103
H	VAL 38	LEU 200
I	MET 26	TYR 152
E	PHE 4	GLY 126
J	GLU 39	TRP 104
K	PHE 30	ILE 104
M	LYS 61	GLN 119
A	MET 1	ALA 99
F	ASN 20	LYS 155
X	VAL 1	SER 76
C	VAL 1	SER 76
P	VAL 1	SER 76
Q	VAL 1	SER 76
R	VAL 1	SER 76
S	VAL 1	SER 76
Y	VAL 1	SER 76
U	VAL 1	SER 76
V	VAL 1	SER 76
W	VAL 1	SER 76
D	MET 1	ALA 384
G	LEU 96	ALA 199
N	VAL 64	ARG 141
O	GLY 5	ASP 59

There are235 helices in PDB entry 9ZB4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	o	10	16	Right-handed 310
Helix 2	AA2	o	17	41	Right-handed alpha
Helix 3	AA3	x	7	18	Right-handed alpha
Helix 4	AA4	x	18	41	Right-handed alpha
Helix 5	AA5	x	44	75	Right-handed alpha
Helix 6	AA6	c	7	17	Right-handed alpha
Helix 7	AA7	c	18	41	Right-handed alpha
Helix 8	AA8	c	44	75	Right-handed alpha
Helix 9	AA9	p	8	17	Right-handed alpha
Helix 10	AB1	p	18	41	Right-handed alpha
Helix 11	AB2	p	44	75	Right-handed alpha
Helix 12	AB3	q	8	17	Right-handed alpha
Helix 13	AB4	q	18	41	Right-handed alpha
Helix 14	AB5	q	44	73	Right-handed alpha
Helix 15	AB6	q	74	76	Right-handed 310
Helix 16	AB7	r	8	41	Right-handed alpha
Helix 17	AB8	r	44	76	Right-handed alpha
Helix 18	AB9	s	7	17	Right-handed alpha
Helix 19	AC1	s	18	41	Right-handed alpha
Helix 20	AC2	s	44	76	Right-handed alpha
Helix 21	AC3	y	7	17	Right-handed alpha
Helix 22	AC4	y	18	41	Right-handed alpha
Helix 23	AC5	y	44	75	Right-handed alpha
Helix 24	AC6	u	7	17	Right-handed alpha
Helix 25	AC7	u	17	41	Right-handed alpha
Helix 26	AC8	u	44	75	Right-handed alpha
Helix 27	AC9	v	7	18	Right-handed alpha
Helix 28	AD1	v	19	41	Right-handed alpha
Helix 29	AD2	v	44	75	Right-handed alpha
Helix 30	AD3	w	7	17	Right-handed alpha
Helix 31	AD4	w	18	41	Right-handed alpha
Helix 32	AD5	w	44	75	Right-handed alpha
Helix 33	AD6	l	9	20	Right-handed alpha
Helix 34	AD7	l	21	23	Right-handed 310
Helix 35	AD8	l	49	63	Right-handed alpha
Helix 36	AD9	l	67	71	Right-handed 310
Helix 37	AE1	l	80	101	Right-handed alpha
Helix 38	AE2	l	102	103	Right-handed 310
Helix 39	AE3	l	104	113	Right-handed 310
Helix 40	AE4	l	123	171	Right-handed alpha
Helix 41	AE5	l	172	177	Right-handed 310
Helix 42	AE6	l	178	226	Right-handed alpha
Helix 43	AE7	b	4	9	Right-handed alpha
Helix 44	AE8	b	10	22	Right-handed alpha
Helix 45	AE9	b	23	41	Right-handed alpha
Helix 46	AF1	b	45	53	Right-handed alpha
Helix 47	AF2	b	63	80	Right-handed alpha
Helix 48	AF3	b	86	90	Right-handed 310
Helix 49	AF4	b	93	101	Right-handed alpha
Helix 50	AF5	d	4	14	Right-handed alpha
Helix 51	AF6	d	14	43	Right-handed alpha
Helix 52	AF7	d	45	51	Right-handed alpha
Helix 53	AF8	d	75	79	Right-handed 310
Helix 54	AF9	d	81	109	Right-handed alpha
Helix 55	AG1	d	112	121	Right-handed alpha
Helix 56	AG2	d	133	165	Right-handed alpha
Helix 57	AG3	d	171	182	Right-handed alpha
Helix 58	AG4	d	190	201	Right-handed alpha
Helix 59	AG5	d	202	204	Right-handed 310
Helix 60	AG6	d	206	210	Right-handed 310
Helix 61	AG7	d	211	222	Right-handed alpha
Helix 62	AG8	d	231	256	Right-handed alpha
Helix 63	AG9	d	257	261	Right-handed 310
Helix 64	AH1	d	263	274	Right-handed alpha
Helix 65	AH2	d	284	307	Right-handed alpha
Helix 66	AH3	d	311	321	Right-handed alpha
Helix 67	AH4	d	322	324	Right-handed 310
Helix 68	AH5	d	332	337	Right-handed 310
Helix 69	AH6	d	341	346	Right-handed alpha
Helix 70	AH7	d	350	361	Right-handed alpha
Helix 71	AH8	d	363	383	Right-handed alpha
Helix 72	AH9	h	39	52	Right-handed alpha
Helix 73	AI1	h	53	56	Right-handed 310
Helix 74	AI2	h	57	90	Right-handed alpha
Helix 75	AI3	h	91	99	Right-handed alpha
Helix 76	AI4	h	108	123	Right-handed alpha
Helix 77	AI5	h	131	164	Right-handed alpha
Helix 78	AI6	h	166	179	Right-handed alpha
Helix 79	AI7	h	184	189	Right-handed alpha
Helix 80	AI8	h	194	198	Right-handed 310
Helix 81	AI9	i	27	42	Right-handed alpha
Helix 82	AJ1	i	44	58	Right-handed alpha
Helix 83	AJ2	i	60	77	Right-handed alpha
Helix 84	AJ3	i	78	93	Right-handed alpha
Helix 85	AJ4	i	94	99	Right-handed alpha
Helix 86	AJ5	i	101	128	Right-handed alpha
Helix 87	AJ6	i	138	147	Right-handed 310
Helix 88	AJ7	e	18	34	Right-handed alpha
Helix 89	AJ8	e	48	54	Right-handed alpha
Helix 90	AJ9	e	54	71	Right-handed alpha
Helix 91	AK1	e	72	84	Right-handed alpha
Helix 92	AK2	e	87	93	Right-handed alpha
Helix 93	AK3	e	95	112	Right-handed alpha
Helix 94	AK4	e	117	121	Right-handed 310
Helix 95	AK5	j	45	50	Right-handed alpha
Helix 96	AK6	j	50	59	Right-handed alpha
Helix 97	AK7	j	59	68	Right-handed alpha
Helix 98	AK8	j	68	99	Right-handed alpha
Helix 99	AK9	k	40	47	Right-handed alpha
Helix 100	AL1	k	78	96	Right-handed alpha
Helix 101	AL2	k	97	99	Right-handed 310
Helix 102	AL3	m	64	114	Right-handed alpha
Helix 103	AL4	g	107	111	Right-handed 310
Helix 104	AL5	g	122	129	Right-handed alpha
Helix 105	AL6	g	129	141	Right-handed alpha
Helix 106	AL7	g	143	160	Right-handed alpha
Helix 107	AL8	g	160	168	Right-handed alpha
Helix 108	AL9	a	14	18	Right-handed 310
Helix 109	AM1	a	19	45	Right-handed alpha
Helix 110	AM2	a	48	70	Right-handed alpha
Helix 111	AM3	a	76	87	Right-handed alpha
Helix 112	AM4	a	88	99	Right-handed alpha
Helix 113	AM5	f	84	88	Right-handed 310
Helix 114	AM6	f	99	127	Right-handed alpha
Helix 115	AM7	n	79	95	Right-handed alpha
Helix 116	AM8	n	104	124	Right-handed alpha
Helix 117	AM9	L	9	19	Right-handed alpha
Helix 118	AN1	L	49	64	Right-handed alpha
Helix 119	AN2	L	67	71	Right-handed 310
Helix 120	AN3	L	80	102	Right-handed alpha
Helix 121	AN4	L	104	113	Right-handed 310
Helix 122	AN5	L	123	136	Right-handed alpha
Helix 123	AN6	L	137	171	Right-handed alpha
Helix 124	AN7	L	172	177	Right-handed 310
Helix 125	AN8	L	178	226	Right-handed alpha
Helix 126	AN9	B	4	9	Right-handed alpha
Helix 127	AO1	B	10	22	Right-handed alpha
Helix 128	AO2	B	23	41	Right-handed alpha
Helix 129	AO3	B	45	52	Right-handed alpha
Helix 130	AO4	B	63	80	Right-handed alpha
Helix 131	AO5	B	86	90	Right-handed 310
Helix 132	AO6	B	93	102	Right-handed alpha
Helix 133	AO7	H	39	52	Right-handed alpha
Helix 134	AO8	H	53	56	Right-handed 310
Helix 135	AO9	H	57	89	Right-handed alpha
Helix 136	AP1	H	91	99	Right-handed alpha
Helix 137	AP2	H	110	117	Right-handed alpha
Helix 138	AP3	H	118	120	Right-handed 310
Helix 139	AP4	H	132	163	Right-handed alpha
Helix 140	AP5	H	166	179	Right-handed alpha
Helix 141	AP6	H	184	190	Right-handed alpha
Helix 142	AP7	H	194	198	Right-handed 310
Helix 143	AP8	I	27	42	Right-handed alpha
Helix 144	AP9	I	44	58	Right-handed alpha
Helix 145	AQ1	I	60	76	Right-handed alpha
Helix 146	AQ2	I	76	93	Right-handed alpha
Helix 147	AQ3	I	94	99	Right-handed alpha
Helix 148	AQ4	I	101	128	Right-handed alpha
Helix 149	AQ5	I	138	147	Right-handed 310
Helix 150	AQ6	E	18	34	Right-handed alpha
Helix 151	AQ7	E	48	54	Right-handed alpha
Helix 152	AQ8	E	54	70	Right-handed alpha
Helix 153	AQ9	E	72	84	Right-handed alpha
Helix 154	AR1	E	87	93	Right-handed alpha
Helix 155	AR2	E	95	113	Right-handed alpha
Helix 156	AR3	E	114	116	Right-handed 310
Helix 157	AR4	J	45	50	Right-handed alpha
Helix 158	AR5	J	50	59	Right-handed alpha
Helix 159	AR6	J	59	68	Right-handed alpha
Helix 160	AR7	J	68	99	Right-handed alpha
Helix 161	AR8	K	40	45	Right-handed alpha
Helix 162	AR9	K	55	59	Right-handed 310
Helix 163	AS1	K	79	95	Right-handed alpha
Helix 164	AS2	M	64	111	Right-handed alpha
Helix 165	AS3	M	114	119	Right-handed alpha
Helix 166	AS4	A	11	16	Right-handed alpha
Helix 167	AS5	A	19	46	Right-handed alpha
Helix 168	AS6	A	53	70	Right-handed alpha
Helix 169	AS7	A	76	87	Right-handed alpha
Helix 170	AS8	A	88	99	Right-handed alpha
Helix 171	AS9	F	30	34	Right-handed 310
Helix 172	AT1	F	36	40	Right-handed 310
Helix 173	AT2	F	99	128	Right-handed alpha
Helix 174	AT3	X	7	17	Right-handed alpha
Helix 175	AT4	X	17	41	Right-handed alpha
Helix 176	AT5	X	44	75	Right-handed alpha
Helix 177	AT6	C	7	17	Right-handed alpha
Helix 178	AT7	C	18	39	Right-handed alpha
Helix 179	AT8	C	41	43	Right-handed 310
Helix 180	AT9	C	44	75	Right-handed alpha
Helix 181	AU1	P	7	17	Right-handed alpha
Helix 182	AU2	P	18	41	Right-handed alpha
Helix 183	AU3	P	44	73	Right-handed alpha
Helix 184	AU4	P	74	76	Right-handed 310
Helix 185	AU5	Q	8	41	Right-handed alpha
Helix 186	AU6	Q	44	76	Right-handed alpha
Helix 187	AU7	R	7	18	Right-handed alpha
Helix 188	AU8	R	18	41	Right-handed alpha
Helix 189	AU9	R	44	76	Right-handed alpha
Helix 190	AV1	S	7	17	Right-handed alpha
Helix 191	AV2	S	18	41	Right-handed alpha
Helix 192	AV3	S	44	76	Right-handed alpha
Helix 193	AV4	Y	7	41	Right-handed alpha
Helix 194	AV5	Y	42	45	Right-handed 310
Helix 195	AV6	Y	47	75	Right-handed alpha
Helix 196	AV7	U	7	17	Right-handed alpha
Helix 197	AV8	U	19	41	Right-handed alpha
Helix 198	AV9	U	44	76	Right-handed alpha
Helix 199	AW1	V	7	17	Right-handed alpha
Helix 200	AW2	V	18	41	Right-handed alpha
Helix 201	AW3	V	44	76	Right-handed alpha
Helix 202	AW4	W	7	17	Right-handed alpha
Helix 203	AW5	W	19	41	Right-handed alpha
Helix 204	AW6	W	44	75	Right-handed alpha
Helix 205	AW7	D	4	14	Right-handed alpha
Helix 206	AW8	D	14	44	Right-handed alpha
Helix 207	AW9	D	45	51	Right-handed alpha
Helix 208	AX1	D	75	79	Right-handed 310
Helix 209	AX2	D	81	109	Right-handed alpha
Helix 210	AX3	D	112	121	Right-handed alpha
Helix 211	AX4	D	133	165	Right-handed alpha
Helix 212	AX5	D	171	182	Right-handed alpha
Helix 213	AX6	D	190	201	Right-handed alpha
Helix 214	AX7	D	202	204	Right-handed 310
Helix 215	AX8	D	206	210	Right-handed 310
Helix 216	AX9	D	211	223	Right-handed alpha
Helix 217	AY1	D	231	257	Right-handed alpha
Helix 218	AY2	D	258	262	Right-handed 310
Helix 219	AY3	D	263	274	Right-handed alpha
Helix 220	AY4	D	284	307	Right-handed alpha
Helix 221	AY5	D	311	321	Right-handed alpha
Helix 222	AY6	D	322	324	Right-handed 310
Helix 223	AY7	D	332	337	Right-handed 310
Helix 224	AY8	D	341	346	Right-handed alpha
Helix 225	AY9	D	350	361	Right-handed alpha
Helix 226	AZ1	D	363	383	Right-handed alpha
Helix 227	AZ2	G	107	111	Right-handed 310
Helix 228	AZ3	G	120	128	Right-handed 310
Helix 229	AZ4	G	129	140	Right-handed alpha
Helix 230	AZ5	G	143	160	Right-handed alpha
Helix 231	AZ6	G	160	168	Right-handed alpha
Helix 232	AZ7	N	79	95	Right-handed alpha
Helix 233	AZ8	N	104	123	Right-handed alpha
Helix 234	AZ9	O	10	16	Right-handed 310
Helix 235	BA1	O	17	41	Right-handed alpha

There are 10 sheets in PDB entry 9ZB4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	x	2	6	first strand
Strand 2	c	2	6	parallel
Strand 3	p	3	5	parallel
Strand 4	q	2	6	parallel
Strand 5	r	2	5	parallel
Strand 6	s	2	6	parallel
Strand 7	y	2	6	parallel
Strand 8	u	3	6	parallel
Strand 9	v	2	6	parallel
Strand 10	w	2	6	parallel
Strand 11	x	2	6	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	l	2	6	first strand
Strand 2	n	71	77	anti-parallel
Strand 3	f	144	145	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	l	42	43	first strand
Strand 2	l	229	230	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	54	55	first strand
Strand 2	d	62	63	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	k	34	35	first strand
Strand 2	f	59	62	anti-parallel
Strand 3	f	67	69	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	2	6	first strand
Strand 2	N	71	76	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	42	43	first strand
Strand 2	L	229	230	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	34	35	first strand
Strand 2	F	59	62	anti-parallel
Strand 3	F	66	69	anti-parallel

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There are 11 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	2	5	first strand
Strand 2	C	2	5	parallel
Strand 3	P	2	5	parallel
Strand 4	Q	2	5	parallel
Strand 5	R	2	5	parallel
Strand 6	S	2	5	parallel
Strand 7	Y	2	6	parallel
Strand 8	U	2	6	parallel
Strand 9	V	2	6	parallel
Strand 10	W	2	6	parallel
Strand 11	X	2	5	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	54	55	first strand
Strand 2	D	62	63	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9ZB4

Analysis of interatomic Contacts of Structural Units in PDB entry:
9ZB4