Analysis of interatomic Contacts of Structural Units in PDB entry:
9ZBI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9ZBI entry

There are 9 chains in PDB entry 9ZBI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 11	ALA 344
B	GLY 11	ALA 344
C	GLY 11	ALA 344
D	GLY 11	ALA 344
E	GLY 11	ALA 344
F	GLY 11	ALA 344
G	ALA 2	ALA 136
H	ALA 2	ALA 136
I	ALA 2	ALA 136

There are 63 helices in PDB entry 9ZBI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	30	36	Right-handed alpha
Helix 2	AA2	A	94	99	Right-handed alpha
Helix 3	AA3	A	111	142	Right-handed alpha
Helix 4	AA4	A	154	160	Right-handed alpha
Helix 5	AA5	A	176	191	Right-handed alpha
Helix 6	AA6	A	206	215	Right-handed alpha
Helix 7	AA7	A	216	227	Right-handed alpha
Helix 8	AA8	A	333	337	Right-handed 310
Helix 9	AA9	B	30	36	Right-handed alpha
Helix 10	AB1	B	111	142	Right-handed alpha
Helix 11	AB2	B	154	160	Right-handed alpha
Helix 12	AB3	B	177	191	Right-handed alpha
Helix 13	AB4	B	206	215	Right-handed alpha
Helix 14	AB5	B	216	227	Right-handed alpha
Helix 15	AB6	B	333	336	Right-handed 310
Helix 16	AB7	C	30	36	Right-handed alpha
Helix 17	AB8	C	111	142	Right-handed alpha
Helix 18	AB9	C	154	160	Right-handed alpha
Helix 19	AC1	C	176	191	Right-handed alpha
Helix 20	AC2	C	206	214	Right-handed alpha
Helix 21	AC3	C	216	227	Right-handed alpha
Helix 22	AC4	C	295	299	Right-handed 310
Helix 23	AC5	C	333	337	Right-handed 310
Helix 24	AC6	D	30	36	Right-handed alpha
Helix 25	AC7	D	111	142	Right-handed alpha
Helix 26	AC8	D	154	160	Right-handed alpha
Helix 27	AC9	D	177	191	Right-handed alpha
Helix 28	AD1	D	206	215	Right-handed alpha
Helix 29	AD2	D	216	227	Right-handed alpha
Helix 30	AD3	D	295	299	Right-handed 310
Helix 31	AD4	D	333	337	Right-handed 310
Helix 32	AD5	E	30	36	Right-handed alpha
Helix 33	AD6	E	94	98	Right-handed 310
Helix 34	AD7	E	111	142	Right-handed alpha
Helix 35	AD8	E	154	160	Right-handed alpha
Helix 36	AD9	E	176	191	Right-handed alpha
Helix 37	AE1	E	206	215	Right-handed alpha
Helix 38	AE2	E	216	227	Right-handed alpha
Helix 39	AE3	E	333	337	Right-handed 310
Helix 40	AE4	F	30	36	Right-handed alpha
Helix 41	AE5	F	111	142	Right-handed alpha
Helix 42	AE6	F	154	159	Right-handed alpha
Helix 43	AE7	F	176	191	Right-handed alpha
Helix 44	AE8	F	206	215	Right-handed alpha
Helix 45	AE9	F	216	227	Right-handed alpha
Helix 46	AF1	F	295	299	Right-handed 310
Helix 47	AF2	F	333	337	Right-handed 310
Helix 48	AF3	G	12	16	Right-handed alpha
Helix 49	AF4	G	24	28	Right-handed 310
Helix 50	AF5	G	59	61	Right-handed 310
Helix 51	AF6	G	73	79	Right-handed alpha
Helix 52	AF7	G	104	117	Right-handed alpha
Helix 53	AF8	H	12	16	Right-handed alpha
Helix 54	AF9	H	24	28	Right-handed 310
Helix 55	AG1	H	59	63	Right-handed 310
Helix 56	AG2	H	73	79	Right-handed alpha
Helix 57	AG3	H	104	118	Right-handed alpha
Helix 58	AG4	I	12	16	Right-handed alpha
Helix 59	AG5	I	24	28	Right-handed 310
Helix 60	AG6	I	37	39	Right-handed 310
Helix 61	AG7	I	59	63	Right-handed 310
Helix 62	AG8	I	73	79	Right-handed alpha
Helix 63	AG9	I	104	117	Right-handed alpha

There are 35 sheets in PDB entry 9ZBI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	17	18	first strand
Strand 2	B	48	54	parallel
Strand 3	A	22	24	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	17	18	first strand
Strand 2	B	48	54	parallel
Strand 3	B	79	82	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	39	42	first strand
Strand 2	A	286	290	parallel
Strand 3	A	327	331	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	82	first strand
Strand 2	A	48	54	anti-parallel
Strand 3	F	17	18	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	82	first strand
Strand 2	A	48	54	anti-parallel
Strand 3	F	22	24	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	62	63	first strand
Strand 2	F	86	93	anti-parallel
Strand 3	F	319	325	anti-parallel
Strand 4	F	307	312	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	93	first strand
Strand 2	A	319	325	anti-parallel
Strand 3	A	307	312	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	165	167	first strand
Strand 2	A	338	341	parallel
Strand 3	A	274	279	anti-parallel
Strand 4	A	201	205	anti-parallel
Strand 5	A	254	258	parallel
Strand 6	A	247	251	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	17	18	first strand
Strand 2	C	48	54	parallel
Strand 3	B	22	24	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	17	18	first strand
Strand 2	C	48	54	parallel
Strand 3	C	76	82	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	39	42	first strand
Strand 2	B	286	290	parallel
Strand 3	B	327	331	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	93	first strand
Strand 2	B	319	325	anti-parallel
Strand 3	B	307	312	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	164	167	first strand
Strand 2	B	338	341	parallel
Strand 3	B	274	279	anti-parallel
Strand 4	B	201	205	anti-parallel
Strand 5	B	254	258	parallel
Strand 6	B	247	251	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	22	24	first strand
Strand 2	D	48	54	parallel
Strand 3	D	76	82	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	39	42	first strand
Strand 2	C	286	290	parallel
Strand 3	C	327	331	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	307	312	first strand
Strand 2	C	319	325	anti-parallel
Strand 3	C	86	93	anti-parallel
Strand 4	D	62	63	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	165	167	first strand
Strand 2	C	338	341	parallel
Strand 3	C	274	279	anti-parallel
Strand 4	C	201	205	anti-parallel
Strand 5	C	254	258	parallel
Strand 6	C	248	251	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	17	18	first strand
Strand 2	E	47	54	parallel
Strand 3	D	22	24	parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	17	18	first strand
Strand 2	E	47	54	parallel
Strand 3	E	76	83	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	39	42	first strand
Strand 2	D	287	290	parallel
Strand 3	D	327	330	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	307	312	first strand
Strand 2	D	319	325	anti-parallel
Strand 3	D	86	93	anti-parallel
Strand 4	E	62	63	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	165	167	first strand
Strand 2	D	338	341	parallel
Strand 3	D	274	279	anti-parallel
Strand 4	D	201	205	anti-parallel
Strand 5	D	254	258	parallel
Strand 6	D	247	251	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	17	18	first strand
Strand 2	F	47	54	parallel
Strand 3	E	22	24	parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	17	18	first strand
Strand 2	F	47	54	parallel
Strand 3	F	76	83	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	39	42	first strand
Strand 2	E	286	290	parallel
Strand 3	E	327	331	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	87	93	first strand
Strand 2	E	319	325	anti-parallel
Strand 3	E	307	312	anti-parallel

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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	165	167	first strand
Strand 2	E	338	341	parallel
Strand 3	E	274	279	anti-parallel
Strand 4	E	201	205	anti-parallel
Strand 5	E	254	258	parallel
Strand 6	E	248	251	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	39	42	first strand
Strand 2	F	286	290	parallel
Strand 3	F	327	331	anti-parallel

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There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	165	167	first strand
Strand 2	F	338	341	parallel
Strand 3	F	274	279	anti-parallel
Strand 4	F	201	205	anti-parallel
Strand 5	F	254	258	parallel
Strand 6	F	248	251	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	17	20	first strand
Strand 2	G	90	93	anti-parallel
Strand 3	G	120	123	parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	31	35	first strand
Strand 2	G	81	85	anti-parallel
Strand 3	G	63	67	anti-parallel
Strand 4	G	47	49	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	17	20	first strand
Strand 2	H	90	93	anti-parallel
Strand 3	H	120	123	parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	31	35	first strand
Strand 2	H	81	85	anti-parallel
Strand 3	H	65	67	anti-parallel
Strand 4	H	47	48	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	17	20	first strand
Strand 2	I	90	93	anti-parallel
Strand 3	I	120	123	parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	31	35	first strand
Strand 2	I	81	85	anti-parallel
Strand 3	I	65	67	anti-parallel
Strand 4	I	47	48	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9ZBI

Analysis of interatomic Contacts of Structural Units in PDB entry:
9ZBI