Analysis of interatomic Contacts of Structural Units in PDB entry:
9ZC5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9ZC5 entry

There are 24 chains in PDB entry 9ZC5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ALA 99
B	VAL 2	ILE 103
C	VAL 31	SER 106
D	MET 1	ALA 384
E	PHE 4	GLY 126
F	ASN 20	LYS 155
G	LEU 96	ALA 199
H	VAL 38	LEU 200
I	MET 26	TYR 152
J	GLU 39	TRP 104
K	PHE 30	ILE 104
L	MET 1	PHE 231
M	LYS 61	GLN 119
N	VAL 64	ARG 141
O	GLY 5	ASP 59
P	VAL 31	SER 106
Q	VAL 31	SER 106
R	VAL 31	SER 106
S	VAL 31	SER 106
T	VAL 31	SER 106
U	VAL 31	SER 106
V	VAL 31	SER 106
W	VAL 31	SER 106
X	VAL 31	SER 106

There are117 helices in PDB entry 9ZC5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	11	16	Right-handed alpha
Helix 2	AA2	A	21	44	Right-handed alpha
Helix 3	AA3	A	49	69	Right-handed alpha
Helix 4	AA4	A	76	87	Right-handed alpha
Helix 5	AA5	A	88	97	Right-handed alpha
Helix 6	AA6	B	4	9	Right-handed alpha
Helix 7	AA7	B	10	22	Right-handed alpha
Helix 8	AA8	B	23	41	Right-handed alpha
Helix 9	AA9	B	45	53	Right-handed alpha
Helix 10	AB1	B	63	81	Right-handed alpha
Helix 11	AB2	B	86	91	Right-handed alpha
Helix 12	AB3	B	93	102	Right-handed alpha
Helix 13	AB4	C	37	47	Right-handed alpha
Helix 14	AB5	C	48	71	Right-handed alpha
Helix 15	AB6	C	74	105	Right-handed alpha
Helix 16	AB7	D	4	14	Right-handed alpha
Helix 17	AB8	D	14	44	Right-handed alpha
Helix 18	AB9	D	45	51	Right-handed alpha
Helix 19	AC1	D	75	79	Right-handed 310
Helix 20	AC2	D	81	109	Right-handed alpha
Helix 21	AC3	D	112	120	Right-handed alpha
Helix 22	AC4	D	133	165	Right-handed alpha
Helix 23	AC5	D	171	182	Right-handed alpha
Helix 24	AC6	D	190	202	Right-handed alpha
Helix 25	AC7	D	206	210	Right-handed 310
Helix 26	AC8	D	211	222	Right-handed alpha
Helix 27	AC9	D	231	256	Right-handed alpha
Helix 28	AD1	D	257	262	Right-handed alpha
Helix 29	AD2	D	263	273	Right-handed alpha
Helix 30	AD3	D	284	307	Right-handed alpha
Helix 31	AD4	D	311	321	Right-handed alpha
Helix 32	AD5	D	322	324	Right-handed 310
Helix 33	AD6	D	332	337	Right-handed 310
Helix 34	AD7	D	341	345	Right-handed 310
Helix 35	AD8	D	350	361	Right-handed alpha
Helix 36	AD9	D	363	382	Right-handed alpha
Helix 37	AE1	E	18	34	Right-handed alpha
Helix 38	AE2	E	48	71	Right-handed alpha
Helix 39	AE3	E	72	84	Right-handed alpha
Helix 40	AE4	E	87	93	Right-handed alpha
Helix 41	AE5	E	95	112	Right-handed alpha
Helix 42	AE6	E	117	121	Right-handed 310
Helix 43	AE7	F	30	34	Right-handed 310
Helix 44	AE8	F	36	40	Right-handed 310
Helix 45	AE9	F	84	88	Right-handed 310
Helix 46	AF1	F	99	128	Right-handed alpha
Helix 47	AF2	G	101	105	Right-handed 310
Helix 48	AF3	G	107	111	Right-handed 310
Helix 49	AF4	G	122	127	Right-handed alpha
Helix 50	AF5	G	129	140	Right-handed alpha
Helix 51	AF6	G	143	160	Right-handed alpha
Helix 52	AF7	G	160	168	Right-handed alpha
Helix 53	AF8	G	181	185	Right-handed 310
Helix 54	AF9	H	40	52	Right-handed alpha
Helix 55	AG1	H	53	56	Right-handed 310
Helix 56	AG2	H	57	90	Right-handed alpha
Helix 57	AG3	H	91	99	Right-handed alpha
Helix 58	AG4	H	108	123	Right-handed alpha
Helix 59	AG5	H	131	163	Right-handed alpha
Helix 60	AG6	H	166	179	Right-handed alpha
Helix 61	AG7	H	184	190	Right-handed alpha
Helix 62	AG8	H	194	198	Right-handed 310
Helix 63	AG9	I	27	42	Right-handed alpha
Helix 64	AH1	I	44	58	Right-handed alpha
Helix 65	AH2	I	60	93	Right-handed alpha
Helix 66	AH3	I	94	100	Right-handed alpha
Helix 67	AH4	I	101	128	Right-handed alpha
Helix 68	AH5	I	138	147	Right-handed 310
Helix 69	AH6	J	45	50	Right-handed alpha
Helix 70	AH7	J	50	59	Right-handed alpha
Helix 71	AH8	J	59	68	Right-handed alpha
Helix 72	AH9	J	68	99	Right-handed alpha
Helix 73	AI1	K	40	45	Right-handed alpha
Helix 74	AI2	K	55	59	Right-handed 310
Helix 75	AI3	K	78	100	Right-handed alpha
Helix 76	AI4	L	9	20	Right-handed alpha
Helix 77	AI5	L	31	35	Right-handed 310
Helix 78	AI6	L	47	49	Right-handed 310
Helix 79	AI7	L	50	66	Right-handed alpha
Helix 80	AI8	L	80	101	Right-handed alpha
Helix 81	AI9	L	105	112	Right-handed 310
Helix 82	AJ1	L	123	171	Right-handed alpha
Helix 83	AJ2	L	172	177	Right-handed 310
Helix 84	AJ3	L	178	226	Right-handed alpha
Helix 85	AJ4	M	64	113	Right-handed alpha
Helix 86	AJ5	N	79	95	Right-handed alpha
Helix 87	AJ6	N	104	123	Right-handed alpha
Helix 88	AJ7	O	10	16	Right-handed 310
Helix 89	AJ8	O	17	41	Right-handed alpha
Helix 90	AJ9	P	37	47	Right-handed alpha
Helix 91	AK1	P	48	71	Right-handed alpha
Helix 92	AK2	P	74	105	Right-handed alpha
Helix 93	AK3	Q	38	47	Right-handed alpha
Helix 94	AK4	Q	48	71	Right-handed alpha
Helix 95	AK5	Q	74	106	Right-handed alpha
Helix 96	AK6	R	37	47	Right-handed alpha
Helix 97	AK7	R	48	71	Right-handed alpha
Helix 98	AK8	R	75	105	Right-handed alpha
Helix 99	AK9	S	37	48	Right-handed alpha
Helix 100	AL1	S	48	71	Right-handed alpha
Helix 101	AL2	S	74	105	Right-handed alpha
Helix 102	AL3	T	37	47	Right-handed alpha
Helix 103	AL4	T	48	71	Right-handed alpha
Helix 104	AL5	T	74	105	Right-handed alpha
Helix 105	AL6	U	37	47	Right-handed alpha
Helix 106	AL7	U	48	71	Right-handed alpha
Helix 107	AL8	U	74	105	Right-handed alpha
Helix 108	AL9	V	37	47	Right-handed alpha
Helix 109	AM1	V	48	71	Right-handed alpha
Helix 110	AM2	V	72	75	Right-handed 310
Helix 111	AM3	V	76	105	Right-handed alpha
Helix 112	AM4	W	37	48	Right-handed alpha
Helix 113	AM5	W	48	71	Right-handed alpha
Helix 114	AM6	W	74	106	Right-handed alpha
Helix 115	AM7	X	37	47	Right-handed alpha
Helix 116	AM8	X	47	71	Right-handed alpha
Helix 117	AM9	X	74	105	Right-handed alpha

There are 4 sheets in PDB entry 9ZC5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	32	34	first strand
Strand 2	S	32	36	parallel
Strand 3	R	32	35	parallel
Strand 4	Q	32	36	parallel
Strand 5	P	32	35	parallel
Strand 6	C	32	36	parallel
Strand 7	X	32	36	parallel
Strand 8	W	32	36	parallel
Strand 9	V	32	35	parallel
Strand 10	U	34	36	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	67	70	first strand
Strand 2	F	58	62	anti-parallel
Strand 3	K	34	35	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	144	145	first strand
Strand 2	N	71	77	parallel
Strand 3	L	2	6	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	42	43	first strand
Strand 2	L	229	230	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9ZC5

Analysis of interatomic Contacts of Structural Units in PDB entry:
9ZC5