Analysis of interatomic Contacts of Structural Units in PDB entry:
9ZCJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9ZCJ entry

There are 2 chains in PDB entry 9ZCJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 225	PRO 731
B	ILE 225	TYR 385

There are 53 helices in PDB entry 9ZCJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	246	265	Right-handed alpha
Helix 2	AA2	A	266	268	Right-handed 310
Helix 3	AA3	A	290	295	Right-handed 310
Helix 4	AA4	A	297	305	Right-handed alpha
Helix 5	AA5	A	319	335	Right-handed alpha
Helix 6	AA6	A	341	346	Right-handed alpha
Helix 7	AA7	A	364	376	Right-handed alpha
Helix 8	AA8	A	379	384	Right-handed 310
Helix 9	AA9	A	403	407	Right-handed alpha
Helix 10	AB1	A	421	433	Right-handed alpha
Helix 11	AB2	A	453	458	Right-handed alpha
Helix 12	AB3	A	485	489	Right-handed 310
Helix 13	AB4	A	529	533	Right-handed 310
Helix 14	AB5	A	565	572	Right-handed alpha
Helix 15	AB6	A	579	588	Right-handed alpha
Helix 16	AB7	A	614	619	Right-handed alpha
Helix 17	AB8	A	620	625	Right-handed 310
Helix 18	AB9	A	634	638	Right-handed 310
Helix 19	AC1	A	715	723	Right-handed alpha
Helix 20	AC2	B	248	266	Right-handed alpha
Helix 21	AC3	B	295	305	Right-handed alpha
Helix 22	AC4	B	318	338	Right-handed alpha
Helix 23	AC5	B	341	346	Right-handed alpha
Helix 24	AC6	B	365	375	Right-handed alpha
Helix 25	AC7	B	421	433	Right-handed alpha
Helix 26	AC8	B	453	458	Right-handed alpha
Helix 27	AC9	B	485	489	Right-handed 310
Helix 28	AD1	B	529	533	Right-handed 310
Helix 29	AD2	B	565	572	Right-handed alpha
Helix 30	AD3	B	579	588	Right-handed alpha
Helix 31	AD4	B	611	620	Right-handed alpha
Helix 32	AD5	B	621	625	Right-handed 310
Helix 33	AD6	B	634	638	Right-handed 310
Helix 34	AD7	B	655	659	Right-handed 310
Helix 35	AD8	B	715	724	Right-handed alpha
Helix 36	AD9	C	80	84	Right-handed 310
Helix 37	AE1	C	125	131	Right-handed alpha
Helix 38	AE2	C	185	192	Right-handed alpha
Helix 39	AE3	C	211	215	Right-handed 310
Helix 40	AE4	D	30	34	Right-handed 310
Helix 41	AE5	D	76	78	Right-handed 310
Helix 42	AE6	D	89	93	Right-handed 310
Helix 43	AE7	D	170	172	Right-handed 310
Helix 44	AE8	D	201	206	Right-handed 310
Helix 45	AE9	G	80	84	Right-handed 310
Helix 46	AF1	G	125	130	Right-handed alpha
Helix 47	AF2	G	185	191	Right-handed alpha
Helix 48	AF3	G	211	215	Right-handed 310
Helix 49	AF4	I	30	34	Right-handed 310
Helix 50	AF5	I	76	78	Right-handed 310
Helix 51	AF6	I	89	93	Right-handed 310
Helix 52	AF7	I	170	172	Right-handed 310
Helix 53	AF8	I	215	218	Right-handed 310

There are 33 sheets in PDB entry 9ZCJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	283	286	first strand
Strand 2	A	271	278	anti-parallel
Strand 3	A	232	240	parallel
Strand 4	A	347	354	parallel
Strand 5	A	386	393	parallel
Strand 6	A	416	419	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	499	500	first strand
Strand 2	A	461	465	anti-parallel
Strand 3	A	472	476	anti-parallel
Strand 4	A	481	484	anti-parallel
Strand 5	A	543	547	anti-parallel
Strand 6	A	515	520	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	592	598	first strand
Strand 2	A	604	610	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	643	646	first strand
Strand 2	A	707	711	anti-parallel
Strand 3	A	670	680	anti-parallel
Strand 4	A	662	667	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	685	687	first strand
Strand 2	A	690	694	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	284	286	first strand
Strand 2	B	271	278	anti-parallel
Strand 3	B	232	240	parallel
Strand 4	B	347	354	parallel
Strand 5	B	386	390	parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	461	465	first strand
Strand 2	B	472	478	anti-parallel
Strand 3	B	481	484	anti-parallel
Strand 4	B	543	547	anti-parallel
Strand 5	B	507	520	anti-parallel
Strand 6	B	499	504	anti-parallel
Strand 7	B	461	465	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	592	598	first strand
Strand 2	B	604	610	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	643	646	first strand
Strand 2	B	707	711	anti-parallel
Strand 3	B	670	680	anti-parallel
Strand 4	B	662	667	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	685	687	first strand
Strand 2	B	690	694	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	12	first strand
Strand 2	C	105	109	parallel
Strand 3	C	85	93	anti-parallel
Strand 4	C	35	39	anti-parallel
Strand 5	C	46	49	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	12	first strand
Strand 2	C	105	109	parallel
Strand 3	C	85	93	anti-parallel
Strand 4	C	98	101	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	17	23	first strand
Strand 2	C	71	77	anti-parallel
Strand 3	C	63	68	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	118	122	first strand
Strand 2	C	134	143	anti-parallel
Strand 3	C	176	184	anti-parallel
Strand 4	C	163	165	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	118	122	first strand
Strand 2	C	134	143	anti-parallel
Strand 3	C	176	184	anti-parallel
Strand 4	C	169	170	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	157	158	first strand
Strand 2	C	149	154	anti-parallel
Strand 3	C	195	201	anti-parallel
Strand 4	C	204	210	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	8	first strand
Strand 2	D	20	27	anti-parallel
Strand 3	D	80	85	anti-parallel
Strand 4	D	71	75	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	12	14	first strand
Strand 2	D	121	125	parallel
Strand 3	D	94	101	anti-parallel
Strand 4	D	36	41	anti-parallel
Strand 5	D	48	53	anti-parallel
Strand 6	D	60	62	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	12	14	first strand
Strand 2	D	121	125	parallel
Strand 3	D	94	101	anti-parallel
Strand 4	D	114	117	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	134	138	first strand
Strand 2	D	149	159	anti-parallel
Strand 3	D	190	199	anti-parallel
Strand 4	D	177	184	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	165	168	first strand
Strand 2	D	208	214	anti-parallel
Strand 3	D	219	225	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	9	12	first strand
Strand 2	G	105	109	parallel
Strand 3	G	85	93	anti-parallel
Strand 4	G	34	39	anti-parallel
Strand 5	G	46	49	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	9	12	first strand
Strand 2	G	105	109	parallel
Strand 3	G	85	93	anti-parallel
Strand 4	G	98	101	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	18	23	first strand
Strand 2	G	71	76	anti-parallel
Strand 3	G	63	68	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	118	122	first strand
Strand 2	G	134	143	anti-parallel
Strand 3	G	176	184	anti-parallel
Strand 4	G	163	165	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	118	122	first strand
Strand 2	G	134	143	anti-parallel
Strand 3	G	176	184	anti-parallel
Strand 4	G	169	170	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	149	154	first strand
Strand 2	G	195	201	anti-parallel
Strand 3	G	204	210	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	5	8	first strand
Strand 2	I	20	27	anti-parallel
Strand 3	I	80	85	anti-parallel
Strand 4	I	71	75	anti-parallel

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There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	12	14	first strand
Strand 2	I	121	125	parallel
Strand 3	I	94	102	anti-parallel
Strand 4	I	36	41	anti-parallel
Strand 5	I	48	53	anti-parallel
Strand 6	I	60	62	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	12	14	first strand
Strand 2	I	121	125	parallel
Strand 3	I	94	102	anti-parallel
Strand 4	I	113	117	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	134	138	first strand
Strand 2	I	149	159	anti-parallel
Strand 3	I	190	199	anti-parallel
Strand 4	I	177	179	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	134	138	first strand
Strand 2	I	149	159	anti-parallel
Strand 3	I	190	199	anti-parallel
Strand 4	I	183	184	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	165	168	first strand
Strand 2	I	209	214	anti-parallel
Strand 3	I	219	224	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9ZCJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9ZCJ