Analysis of interatomic Contacts of Structural Units in PDB entry:
9ZCL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9ZCL entry

There are 5 chains in PDB entry 9ZCL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
P	ILE 1	TYR 10
C	GLY 1	LEU 272
D	MET 0	MET 99
A	GLN 2	PHE 205
B	VAL 4	ALA 239

There are 13 helices in PDB entry 9ZCL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	49	54	Right-handed alpha
Helix 2	AA2	C	56	85	Right-handed alpha
Helix 3	AA3	C	137	150	Right-handed alpha
Helix 4	AA4	C	151	161	Right-handed alpha
Helix 5	AA5	C	162	175	Right-handed alpha
Helix 6	AA6	A	70	73	Right-handed 310
Helix 7	AA7	A	83	87	Right-handed 310
Helix 8	AA8	A	99	103	Right-handed 310
Helix 9	AA9	A	189	194	Right-handed alpha
Helix 10	AB1	B	82	86	Right-handed 310
Helix 11	AB2	B	112	116	Right-handed 310
Helix 12	AB3	B	127	135	Right-handed alpha
Helix 13	AB4	B	194	199	Right-handed alpha

There are 16 sheets in PDB entry 9ZCL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	46	47	first strand
Strand 2	C	31	37	anti-parallel
Strand 3	C	21	28	anti-parallel
Strand 4	C	3	12	anti-parallel
Strand 5	C	94	103	anti-parallel
Strand 6	C	109	118	anti-parallel
Strand 7	C	121	126	anti-parallel
Strand 8	C	133	135	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	186	191	first strand
Strand 2	C	201	208	anti-parallel
Strand 3	C	241	245	anti-parallel
Strand 4	C	234	235	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	6	11	first strand
Strand 2	D	21	30	anti-parallel
Strand 3	D	62	70	anti-parallel
Strand 4	D	50	51	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	6	11	first strand
Strand 2	D	21	30	anti-parallel
Strand 3	D	62	70	anti-parallel
Strand 4	D	55	56	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	44	45	first strand
Strand 2	D	35	41	anti-parallel
Strand 3	D	78	84	anti-parallel
Strand 4	D	91	94	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	5	first strand
Strand 2	A	24	25	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	14	first strand
Strand 2	A	111	116	parallel
Strand 3	A	88	96	anti-parallel
Strand 4	A	32	39	anti-parallel
Strand 5	A	46	52	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	14	first strand
Strand 2	A	111	116	parallel
Strand 3	A	88	96	anti-parallel
Strand 4	A	106	107	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	19	21	first strand
Strand 2	A	74	79	anti-parallel
Strand 3	A	64	69	anti-parallel
Strand 4	A	59	61	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	125	130	first strand
Strand 2	A	138	145	anti-parallel
Strand 3	A	177	183	anti-parallel
Strand 4	A	159	161	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	166	167	first strand
Strand 2	B	166	168	anti-parallel
Strand 3	B	184	193	anti-parallel
Strand 4	B	136	146	anti-parallel
Strand 5	B	120	124	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	166	167	first strand
Strand 2	B	166	168	anti-parallel
Strand 3	B	184	193	anti-parallel
Strand 4	B	173	174	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	5	7	first strand
Strand 2	B	19	24	anti-parallel
Strand 3	B	74	78	anti-parallel
Strand 4	B	64	68	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	14	first strand
Strand 2	B	105	110	parallel
Strand 3	B	87	95	anti-parallel
Strand 4	B	31	38	anti-parallel
Strand 5	B	42	49	anti-parallel
Strand 6	B	56	57	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	14	first strand
Strand 2	B	105	110	parallel
Strand 3	B	87	95	anti-parallel
Strand 4	B	98	101	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	160	162	first strand
Strand 2	B	151	157	anti-parallel
Strand 3	B	203	210	anti-parallel
Strand 4	B	229	236	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9ZCL

Analysis of interatomic Contacts of Structural Units in PDB entry:
9ZCL