Analysis of interatomic Contacts of Structural Units in PDB entry:
9ZCM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9ZCM entry

There are 2 chains in PDB entry 9ZCM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 2SER 207
B
 ALA 2ASP 240
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 9ZCM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
70 72Right-handed 310
Helix 2
AA2
A
83 87Right-handed 310
Helix 3
AA3
A
170 173Right-handed 310
Helix 4
AA4
A
189 194Right-handed alpha
Helix 5
AA5
B
82 86Right-handed 310
Helix 6
AA6
B
112 116Right-handed 310
Helix 7
AA7
B
127 135Right-handed alpha
Helix 8
AA8
B
194 198Right-handed alpha
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There are 9 sheets in PDB entry 9ZCM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 5first strand
Strand 2
A
19 25anti-parallel
Strand 3
A
74 79anti-parallel
Strand 4
A
64 69anti-parallel
Strand 5
A
59 61anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 14first strand
Strand 2
A
111 116parallel
Strand 3
A
88 97anti-parallel
Strand 4
A
33 39anti-parallel
Strand 5
A
46 52anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 14first strand
Strand 2
A
111 116parallel
Strand 3
A
88 97anti-parallel
Strand 4
A
103 107anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
159 161first strand
Strand 2
A
174 183anti-parallel
Strand 3
A
138 143anti-parallel
Strand 4
A
125 131anti-parallel
Strand 5
B
120 125anti-parallel
Strand 6
B
136 146anti-parallel
Strand 7
B
184 193anti-parallel
Strand 8
B
166 168anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 169first strand
Strand 2
A
174 183anti-parallel
Strand 3
A
138 143anti-parallel
Strand 4
A
125 131anti-parallel
Strand 5
B
120 125anti-parallel
Strand 6
B
136 146anti-parallel
Strand 7
B
184 193anti-parallel
Strand 8
B
173 174anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 7first strand
Strand 2
B
19 24anti-parallel
Strand 3
B
75 78anti-parallel
Strand 4
B
64 67anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 14first strand
Strand 2
B
105 110parallel
Strand 3
B
87 94anti-parallel
Strand 4
B
31 38anti-parallel
Strand 5
B
42 51anti-parallel
Strand 6
B
54 57anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 14first strand
Strand 2
B
105 110parallel
Strand 3
B
87 94anti-parallel
Strand 4
B
100 101anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
160 162first strand
Strand 2
B
151 157anti-parallel
Strand 3
B
203 210anti-parallel
Strand 4
B
229 236anti-parallel
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