Analysis of interatomic Contacts of Structural Units in PDB entry:
9ZD2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9ZD2 entry

There are 9 chains in PDB entry 9ZD2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	SER 3	GLN 249
B	SER 3	GLN 249
C	SER 3	GLN 249
A	SER 3	GLN 249
F	UNK 5	PRO 200
G	UNK 5	PRO 200
E	UNK 5	PRO 200
I	UNK 5	PRO 200
H	UNK 5	PRO 200

There are 83 helices in PDB entry 9ZD2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	3	6	Right-handed 310
Helix 2	AA2	D	7	34	Right-handed alpha
Helix 3	AA3	D	35	37	Right-handed 310
Helix 4	AA4	D	48	72	Right-handed alpha
Helix 5	AA5	D	76	86	Right-handed alpha
Helix 6	AA6	D	90	116	Right-handed alpha
Helix 7	AA7	D	134	157	Right-handed alpha
Helix 8	AA8	D	167	188	Right-handed alpha
Helix 9	AA9	D	192	203	Right-handed alpha
Helix 10	AB1	D	210	230	Right-handed alpha
Helix 11	AB2	D	237	248	Right-handed alpha
Helix 12	AB3	B	3	6	Right-handed 310
Helix 13	AB4	B	7	33	Right-handed alpha
Helix 14	AB5	B	34	37	Right-handed 310
Helix 15	AB6	B	48	72	Right-handed alpha
Helix 16	AB7	B	76	86	Right-handed alpha
Helix 17	AB8	B	90	116	Right-handed alpha
Helix 18	AB9	B	134	157	Right-handed alpha
Helix 19	AC1	B	167	188	Right-handed alpha
Helix 20	AC2	B	192	203	Right-handed alpha
Helix 21	AC3	B	210	230	Right-handed alpha
Helix 22	AC4	B	237	248	Right-handed alpha
Helix 23	AC5	C	3	6	Right-handed 310
Helix 24	AC6	C	7	33	Right-handed alpha
Helix 25	AC7	C	34	37	Right-handed 310
Helix 26	AC8	C	48	72	Right-handed alpha
Helix 27	AC9	C	76	86	Right-handed alpha
Helix 28	AD1	C	90	116	Right-handed alpha
Helix 29	AD2	C	134	157	Right-handed alpha
Helix 30	AD3	C	167	188	Right-handed alpha
Helix 31	AD4	C	192	204	Right-handed alpha
Helix 32	AD5	C	208	230	Right-handed alpha
Helix 33	AD6	C	237	248	Right-handed alpha
Helix 34	AD7	A	3	6	Right-handed 310
Helix 35	AD8	A	7	33	Right-handed alpha
Helix 36	AD9	A	34	37	Right-handed 310
Helix 37	AE1	A	48	72	Right-handed alpha
Helix 38	AE2	A	76	86	Right-handed alpha
Helix 39	AE3	A	90	116	Right-handed alpha
Helix 40	AE4	A	134	157	Right-handed alpha
Helix 41	AE5	A	167	188	Right-handed alpha
Helix 42	AE6	A	192	204	Right-handed alpha
Helix 43	AE7	A	210	230	Right-handed alpha
Helix 44	AE8	A	237	248	Right-handed alpha
Helix 45	AE9	F	6	12	Right-handed alpha
Helix 46	AF1	F	13	15	Right-handed 310
Helix 47	AF2	F	28	45	Right-handed alpha
Helix 48	AF3	F	45	53	Right-handed alpha
Helix 49	AF4	F	128	135	Right-handed alpha
Helix 50	AF5	F	138	157	Right-handed alpha
Helix 51	AF6	F	159	166	Right-handed alpha
Helix 52	AF7	F	166	183	Right-handed alpha
Helix 53	AF8	G	6	12	Right-handed alpha
Helix 54	AF9	G	14	19	Right-handed alpha
Helix 55	AG1	G	28	45	Right-handed alpha
Helix 56	AG2	G	45	50	Right-handed alpha
Helix 57	AG3	G	128	135	Right-handed alpha
Helix 58	AG4	G	138	156	Right-handed alpha
Helix 59	AG5	G	159	166	Right-handed alpha
Helix 60	AG6	G	166	183	Right-handed alpha
Helix 61	AG7	E	6	13	Right-handed alpha
Helix 62	AG8	E	28	45	Right-handed alpha
Helix 63	AG9	E	45	53	Right-handed alpha
Helix 64	AH1	E	128	135	Right-handed alpha
Helix 65	AH2	E	138	157	Right-handed alpha
Helix 66	AH3	E	159	166	Right-handed alpha
Helix 67	AH4	E	166	183	Right-handed alpha
Helix 68	AH5	I	6	11	Right-handed alpha
Helix 69	AH6	I	12	15	Right-handed 310
Helix 70	AH7	I	28	45	Right-handed alpha
Helix 71	AH8	I	45	53	Right-handed alpha
Helix 72	AH9	I	128	135	Right-handed alpha
Helix 73	AI1	I	138	157	Right-handed alpha
Helix 74	AI2	I	159	166	Right-handed alpha
Helix 75	AI3	I	166	183	Right-handed alpha
Helix 76	AI4	H	6	11	Right-handed alpha
Helix 77	AI5	H	12	19	Right-handed 310
Helix 78	AI6	H	28	45	Right-handed alpha
Helix 79	AI7	H	45	53	Right-handed alpha
Helix 80	AI8	H	128	135	Right-handed alpha
Helix 81	AI9	H	138	157	Right-handed alpha
Helix 82	AJ1	H	159	166	Right-handed alpha
Helix 83	AJ2	H	166	183	Right-handed alpha

There are 16 sheets in PDB entry 9ZD2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	54	57	first strand
Strand 2	F	80	83	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	61	66	first strand
Strand 2	F	90	95	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	99	102	first strand
Strand 2	F	115	126	anti-parallel
Strand 3	F	106	109	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	99	102	first strand
Strand 2	F	115	126	anti-parallel
Strand 3	F	187	198	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	54	57	first strand
Strand 2	G	80	83	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	61	66	first strand
Strand 2	G	90	95	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	99	109	first strand
Strand 2	G	115	126	anti-parallel
Strand 3	G	187	198	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	54	57	first strand
Strand 2	E	80	83	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	61	66	first strand
Strand 2	E	90	95	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	99	109	first strand
Strand 2	E	115	126	anti-parallel
Strand 3	E	187	198	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	54	57	first strand
Strand 2	I	80	83	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	61	66	first strand
Strand 2	I	90	95	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	99	109	first strand
Strand 2	I	115	126	anti-parallel
Strand 3	I	187	198	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	54	57	first strand
Strand 2	H	80	83	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	61	66	first strand
Strand 2	H	90	95	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	99	109	first strand
Strand 2	H	115	126	anti-parallel
Strand 3	H	187	198	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9ZD2

Analysis of interatomic Contacts of Structural Units in PDB entry:
9ZD2