Analysis of interatomic Contacts of Structural Units in PDB entry:
9ZD6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9ZD6 entry

There are 5 chains in PDB entry 9ZD6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 13ALA 402
B
 ASP 13ALA 402
C
 T 1 T 8
C
 G 10 C 18
D
 G 1 A 18
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 9ZD6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 29Right-handed alpha
Helix 2
AA2
A
41 53Right-handed alpha
Helix 3
AA3
A
67 76Right-handed alpha
Helix 4
AA4
A
79 87Right-handed alpha
Helix 5
AA5
A
108 112Right-handed 310
Helix 6
AA6
A
113 119Right-handed alpha
Helix 7
AA7
A
120 123Right-handed 310
Helix 8
AA8
A
124 134Right-handed alpha
Helix 9
AA9
A
134 148Right-handed alpha
Helix 10
AB1
A
153 164Right-handed alpha
Helix 11
AB2
A
164 172Right-handed alpha
Helix 12
AB3
A
174 188Right-handed alpha
Helix 13
AB4
A
207 211Right-handed alpha
Helix 14
AB5
A
212 217Right-handed alpha
Helix 15
AB6
A
222 239Right-handed alpha
Helix 16
AB7
A
242 249Right-handed alpha
Helix 17
AB8
A
253 267Right-handed alpha
Helix 18
AB9
A
309 318Right-handed alpha
Helix 19
AC1
A
328 332Right-handed 310
Helix 20
AC2
A
376 392Right-handed alpha
Helix 21
AC3
B
17 29Right-handed alpha
Helix 22
AC4
B
41 53Right-handed alpha
Helix 23
AC5
B
65 67Right-handed 310
Helix 24
AC6
B
68 76Right-handed alpha
Helix 25
AC7
B
79 86Right-handed alpha
Helix 26
AC8
B
110 112Right-handed 310
Helix 27
AC9
B
113 119Right-handed alpha
Helix 28
AD1
B
120 123Right-handed 310
Helix 29
AD2
B
124 134Right-handed alpha
Helix 30
AD3
B
134 149Right-handed alpha
Helix 31
AD4
B
153 164Right-handed alpha
Helix 32
AD5
B
164 172Right-handed alpha
Helix 33
AD6
B
174 188Right-handed alpha
Helix 34
AD7
B
207 211Right-handed alpha
Helix 35
AD8
B
212 217Right-handed alpha
Helix 36
AD9
B
222 239Right-handed alpha
Helix 37
AE1
B
243 249Right-handed alpha
Helix 38
AE2
B
253 267Right-handed alpha
Helix 39
AE3
B
309 318Right-handed alpha
Helix 40
AE4
B
376 392Right-handed alpha
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There are 8 sheets in PDB entry 9ZD6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 16first strand
Strand 2
A
270 275parallel
Strand 3
A
282 285anti-parallel
Strand 4
A
240 241anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 56first strand
Strand 2
A
102 106anti-parallel
Strand 3
A
94 98anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 152first strand
Strand 2
A
202 206anti-parallel
Strand 3
A
191 196anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
296 299first strand
Strand 2
A
338 344anti-parallel
Strand 3
A
346 356anti-parallel
Strand 4
A
361 369anti-parallel
Strand 5
A
398 400parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
15 16first strand
Strand 2
B
270 275parallel
Strand 3
B
282 285anti-parallel
Strand 4
B
240 242anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
55 56first strand
Strand 2
B
102 106anti-parallel
Strand 3
B
94 98anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
151 152first strand
Strand 2
B
202 206anti-parallel
Strand 3
B
191 196anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
296 299first strand
Strand 2
B
338 344anti-parallel
Strand 3
B
346 356anti-parallel
Strand 4
B
361 367anti-parallel
Strand 5
B
398 400parallel
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