Analysis of interatomic Contacts of Structural Units in PDB entry:
9ZDG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9ZDG entry

There are 2 chains in PDB entry 9ZDG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 35LEU 219
A
 VAL 223ALA 452
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 9ZDG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
36 57Right-handed alpha
Helix 2
AA2
A
67 70Right-handed 310
Helix 3
AA3
A
157 162Right-handed alpha
Helix 4
AA4
A
211 216Right-handed 310
Helix 5
AA5
A
223 227Right-handed 310
Helix 6
AA6
A
230 236Right-handed 310
Helix 7
AA7
A
237 242Right-handed alpha
Helix 8
AA8
A
300 304Right-handed 310
Helix 9
AA9
A
310 325Right-handed alpha
Helix 10
AB1
A
333 345Right-handed alpha
Helix 11
AB2
A
349 359Right-handed alpha
Helix 12
AB3
A
370 378Right-handed alpha
Helix 13
AB4
A
382 398Right-handed alpha
Helix 14
AB5
A
406 417Right-handed alpha
Helix 15
AB6
A
422 434Right-handed alpha
Helix 16
AB7
A
442 452Right-handed alpha
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There are 2 sheets in PDB entry 9ZDG. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 66first strand
Strand 2
A
71 81anti-parallel
Strand 3
A
87 98anti-parallel
Strand 4
A
247 255anti-parallel
Strand 5
A
260 270anti-parallel
Strand 6
A
273 283anti-parallel
Strand 7
A
167 177parallel
Strand 8
A
180 191anti-parallel
Strand 9
A
196 203anti-parallel
Strand 10
A
128 138anti-parallel
Strand 11
A
110 119anti-parallel
Strand 12
A
61 66anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
331 332first strand
Strand 2
A
368 369anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il