Analysis of interatomic Contacts of Structural Units in PDB entry:
9ZFN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9ZFN entry

There are 2 chains in PDB entry 9ZFN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 0GLU 174
B
 PRO -1GLU 174
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 4 helices in PDB entry 9ZFN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
32 38Right-handed alpha
Helix 2
AA2
A
122 126Right-handed 310
Helix 3
AA3
B
32 36Right-handed alpha
Helix 4
AA4
B
122 126Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 9ZFN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 41first strand
Strand 2
A
7 12anti-parallel
Strand 3
A
15 24anti-parallel
Strand 4
A
27 31anti-parallel
Strand 5
A
55 59anti-parallel
Strand 6
A
47 52anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 82first strand
Strand 2
A
93 105anti-parallel
Strand 3
A
108 117anti-parallel
Strand 4
A
161 165anti-parallel
Strand 5
A
145 155anti-parallel
Strand 6
A
137 142anti-parallel
Strand 7
A
79 82anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
40 41first strand
Strand 2
B
7 12anti-parallel
Strand 3
B
15 24anti-parallel
Strand 4
B
27 31anti-parallel
Strand 5
B
55 59anti-parallel
Strand 6
B
47 52anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
70 71first strand
Strand 2
B
145 154parallel
Strand 3
B
161 165anti-parallel
Strand 4
B
108 117anti-parallel
Strand 5
B
93 105anti-parallel
Strand 6
B
79 82anti-parallel
Strand 7
B
137 142anti-parallel
Strand 8
B
145 154anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il