Analysis of interatomic Contacts of Structural Units in PDB entry:
9ZKM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9ZKM entry

There are 8 chains in PDB entry 9ZKM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 390	LYS 813
B	VAL 396	ARG 819
C	THR 390	LYS 813
D	VAL 396	ARG 819
E	PHE 4	ALA 210
F	PHE 4	ALA 210
G	VAL 19	ARG 231
H	VAL 19	ARG 231

There are 87 helices in PDB entry 9ZKM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	419	433	Right-handed alpha
Helix 2	AA2	A	457	465	Right-handed alpha
Helix 3	AA3	A	478	483	Right-handed alpha
Helix 4	AA4	A	511	515	Right-handed 310
Helix 5	AA5	A	518	542	Right-handed alpha
Helix 6	AA6	A	568	581	Right-handed alpha
Helix 7	AA7	A	591	625	Right-handed alpha
Helix 8	AA8	A	631	638	Right-handed alpha
Helix 9	AA9	A	649	658	Right-handed alpha
Helix 10	AB1	A	660	672	Right-handed alpha
Helix 11	AB2	A	681	693	Right-handed alpha
Helix 12	AB3	A	702	709	Right-handed alpha
Helix 13	AB4	A	739	752	Right-handed alpha
Helix 14	AB5	A	754	764	Right-handed alpha
Helix 15	AB6	A	788	813	Right-handed alpha
Helix 16	AB7	B	416	419	Right-handed 310
Helix 17	AB8	B	423	436	Right-handed alpha
Helix 18	AB9	B	464	469	Right-handed alpha
Helix 19	AC1	B	482	487	Right-handed alpha
Helix 20	AC2	B	515	519	Right-handed 310
Helix 21	AC3	B	522	545	Right-handed alpha
Helix 22	AC4	B	572	585	Right-handed alpha
Helix 23	AC5	B	595	626	Right-handed alpha
Helix 24	AC6	B	635	641	Right-handed alpha
Helix 25	AC7	B	653	661	Right-handed alpha
Helix 26	AC8	B	664	676	Right-handed alpha
Helix 27	AC9	B	685	695	Right-handed alpha
Helix 28	AD1	B	705	714	Right-handed alpha
Helix 29	AD2	B	742	756	Right-handed alpha
Helix 30	AD3	B	757	768	Right-handed alpha
Helix 31	AD4	B	789	791	Right-handed 310
Helix 32	AD5	B	792	819	Right-handed alpha
Helix 33	AD6	C	412	415	Right-handed 310
Helix 34	AD7	C	419	433	Right-handed alpha
Helix 35	AD8	C	451	454	Right-handed 310
Helix 36	AD9	C	459	464	Right-handed alpha
Helix 37	AE1	C	478	483	Right-handed alpha
Helix 38	AE2	C	511	515	Right-handed 310
Helix 39	AE3	C	518	541	Right-handed alpha
Helix 40	AE4	C	569	581	Right-handed alpha
Helix 41	AE5	C	591	626	Right-handed alpha
Helix 42	AE6	C	631	638	Right-handed alpha
Helix 43	AE7	C	649	658	Right-handed alpha
Helix 44	AE8	C	660	672	Right-handed alpha
Helix 45	AE9	C	681	692	Right-handed alpha
Helix 46	AF1	C	702	711	Right-handed alpha
Helix 47	AF2	C	738	752	Right-handed alpha
Helix 48	AF3	C	753	763	Right-handed alpha
Helix 49	AF4	C	784	787	Right-handed 310
Helix 50	AF5	C	788	813	Right-handed alpha
Helix 51	AF6	D	416	421	Right-handed 310
Helix 52	AF7	D	423	437	Right-handed alpha
Helix 53	AF8	D	461	469	Right-handed alpha
Helix 54	AF9	D	482	487	Right-handed alpha
Helix 55	AG1	D	515	519	Right-handed 310
Helix 56	AG2	D	522	546	Right-handed alpha
Helix 57	AG3	D	573	585	Right-handed alpha
Helix 58	AG4	D	595	626	Right-handed alpha
Helix 59	AG5	D	636	641	Right-handed alpha
Helix 60	AG6	D	653	661	Right-handed alpha
Helix 61	AG7	D	664	676	Right-handed alpha
Helix 62	AG8	D	685	696	Right-handed alpha
Helix 63	AG9	D	706	714	Right-handed alpha
Helix 64	AH1	D	743	756	Right-handed alpha
Helix 65	AH2	D	757	768	Right-handed alpha
Helix 66	AH3	D	774	780	Right-handed alpha
Helix 67	AH4	D	792	819	Right-handed alpha
Helix 68	AH5	E	5	29	Right-handed alpha
Helix 69	AH6	E	92	105	Right-handed alpha
Helix 70	AH7	E	105	125	Right-handed alpha
Helix 71	AH8	E	132	160	Right-handed alpha
Helix 72	AH9	E	177	210	Right-handed alpha
Helix 73	AI1	F	5	30	Right-handed alpha
Helix 74	AI2	F	92	105	Right-handed alpha
Helix 75	AI3	F	105	126	Right-handed alpha
Helix 76	AI4	F	132	160	Right-handed alpha
Helix 77	AI5	F	177	210	Right-handed alpha
Helix 78	AI6	G	20	41	Right-handed alpha
Helix 79	AI7	G	118	128	Right-handed alpha
Helix 80	AI8	G	128	150	Right-handed alpha
Helix 81	AI9	G	156	184	Right-handed alpha
Helix 82	AJ1	G	202	231	Right-handed alpha
Helix 83	AJ2	H	20	41	Right-handed alpha
Helix 84	AJ3	H	118	128	Right-handed alpha
Helix 85	AJ4	H	128	147	Right-handed alpha
Helix 86	AJ5	H	155	184	Right-handed alpha
Helix 87	AJ6	H	202	231	Right-handed alpha

There are 21 sheets in PDB entry 9ZKM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	436	440	first strand
Strand 2	A	391	395	parallel
Strand 3	A	470	476	parallel
Strand 4	A	726	732	anti-parallel
Strand 5	A	486	487	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	436	440	first strand
Strand 2	A	391	395	parallel
Strand 3	A	470	476	parallel
Strand 4	A	726	732	anti-parallel
Strand 5	A	492	494	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	403	404	first strand
Strand 2	A	417	418	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	642	644	first strand
Strand 2	A	696	701	parallel
Strand 3	A	496	500	anti-parallel
Strand 4	A	717	719	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	442	444	first strand
Strand 2	B	397	399	parallel
Strand 3	B	474	480	parallel
Strand 4	B	730	735	anti-parallel
Strand 5	B	496	498	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	407	408	first strand
Strand 2	B	421	422	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	503	504	first strand
Strand 2	B	721	722	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	682	683	first strand
Strand 2	B	646	650	parallel
Strand 3	B	700	702	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	391	395	first strand
Strand 2	C	436	440	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	403	404	first strand
Strand 2	C	417	418	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	447	450	first strand
Strand 2	C	455	458	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	471	476	first strand
Strand 2	C	726	733	anti-parallel
Strand 3	C	485	487	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	471	476	first strand
Strand 2	C	726	733	anti-parallel
Strand 3	C	492	494	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	642	644	first strand
Strand 2	C	696	701	parallel
Strand 3	C	496	501	anti-parallel
Strand 4	C	716	719	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	475	480	first strand
Strand 2	D	730	736	anti-parallel
Strand 3	D	490	498	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	646	648	first strand
Strand 2	D	700	705	parallel
Strand 3	D	500	504	anti-parallel
Strand 4	D	721	723	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	34	35	first strand
Strand 2	E	175	176	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	37	39	first strand
Strand 2	E	56	61	anti-parallel
Strand 3	E	65	68	anti-parallel
Strand 4	E	77	79	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	34	38	first strand
Strand 2	F	57	61	anti-parallel
Strand 3	F	65	68	anti-parallel
Strand 4	F	76	79	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	100	102	first strand
Strand 2	G	88	91	anti-parallel
Strand 3	G	81	84	anti-parallel
Strand 4	G	45	48	anti-parallel
Strand 5	G	200	201	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	82	84	first strand
Strand 2	H	88	91	anti-parallel
Strand 3	H	100	102	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9ZKM

Analysis of interatomic Contacts of Structural Units in PDB entry:
9ZKM