Analysis of interatomic Contacts of Structural Units in PDB entry:
9ZKP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9ZKP entry

There are 8 chains in PDB entry 9ZKP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 507LYS 813
B
 LYS 511ARG 819
C
 LYS 507LYS 813
D
 LYS 511ARG 819
E
 ALA 2PHE 160
F
 ALA 2SER 159
G
 CYS 15CYS 235
H
 CYS 15CYS 235
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 9ZKP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
511 515Right-handed 310
Helix 2
AA2
A
518 540Right-handed alpha
Helix 3
AA3
A
568 581Right-handed alpha
Helix 4
AA4
A
591 626Right-handed alpha
Helix 5
AA5
A
788 813Right-handed alpha
Helix 6
AA6
B
515 519Right-handed 310
Helix 7
AA7
B
522 547Right-handed alpha
Helix 8
AA8
B
572 585Right-handed alpha
Helix 9
AA9
B
595 626Right-handed alpha
Helix 10
AB1
B
792 819Right-handed alpha
Helix 11
AB2
C
518 541Right-handed alpha
Helix 12
AB3
C
568 581Right-handed alpha
Helix 13
AB4
C
591 625Right-handed alpha
Helix 14
AB5
C
788 813Right-handed alpha
Helix 15
AB6
D
515 519Right-handed 310
Helix 16
AB7
D
522 546Right-handed alpha
Helix 17
AB8
D
572 585Right-handed alpha
Helix 18
AB9
D
595 626Right-handed alpha
Helix 19
AC1
D
792 819Right-handed alpha
Helix 20
AC2
E
4 37Right-handed alpha
Helix 21
AC3
E
57 85Right-handed alpha
Helix 22
AC4
E
87 108Right-handed alpha
Helix 23
AC5
E
127 159Right-handed alpha
Helix 24
AC6
F
3 37Right-handed alpha
Helix 25
AC7
F
57 85Right-handed alpha
Helix 26
AC8
F
87 108Right-handed alpha
Helix 27
AC9
F
127 159Right-handed alpha
Helix 28
AD1
G
16 41Right-handed alpha
Helix 29
AD2
G
116 128Right-handed alpha
Helix 30
AD3
G
128 151Right-handed alpha
Helix 31
AD4
G
155 183Right-handed alpha
Helix 32
AD5
G
202 235Right-handed alpha
Helix 33
AD6
H
16 41Right-handed alpha
Helix 34
AD7
H
116 128Right-handed alpha
Helix 35
AD8
H
128 151Right-handed alpha
Helix 36
AD9
H
155 182Right-handed alpha
Helix 37
AE1
H
202 235Right-handed alpha
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There are 2 sheets in PDB entry 9ZKP. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
100 102first strand
Strand 2
G
88 91anti-parallel
Strand 3
G
81 84anti-parallel
Strand 4
G
45 48anti-parallel
Strand 5
G
200 201anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
100 102first strand
Strand 2
H
88 91anti-parallel
Strand 3
H
81 84anti-parallel
Strand 4
H
45 48anti-parallel
Strand 5
H
200 201anti-parallel
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