Analysis of interatomic Contacts of Structural Units in PDB entry:
9ZKQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9ZKQ entry

There are 8 chains in PDB entry 9ZKQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 390	LYS 813
B	VAL 396	ARG 819
C	THR 390	LYS 813
D	VAL 396	ARG 819
E	ALA 2	PHE 160
F	PHE 4	ALA 210
G	CYS 15	CYS 235
H	CYS 15	CYS 235

There are 86 helices in PDB entry 9ZKQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	412	415	Right-handed 310
Helix 2	AA2	A	419	433	Right-handed alpha
Helix 3	AA3	A	458	466	Right-handed alpha
Helix 4	AA4	A	478	483	Right-handed alpha
Helix 5	AA5	A	511	515	Right-handed 310
Helix 6	AA6	A	518	541	Right-handed alpha
Helix 7	AA7	A	569	581	Right-handed alpha
Helix 8	AA8	A	591	625	Right-handed alpha
Helix 9	AA9	A	631	638	Right-handed alpha
Helix 10	AB1	A	649	654	Right-handed alpha
Helix 11	AB2	A	655	658	Right-handed 310
Helix 12	AB3	A	660	672	Right-handed alpha
Helix 13	AB4	A	681	691	Right-handed alpha
Helix 14	AB5	A	701	711	Right-handed alpha
Helix 15	AB6	A	740	749	Right-handed alpha
Helix 16	AB7	A	753	762	Right-handed alpha
Helix 17	AB8	A	788	813	Right-handed alpha
Helix 18	AB9	B	417	419	Right-handed 310
Helix 19	AC1	B	423	436	Right-handed alpha
Helix 20	AC2	B	464	469	Right-handed alpha
Helix 21	AC3	B	482	487	Right-handed alpha
Helix 22	AC4	B	515	519	Right-handed 310
Helix 23	AC5	B	522	546	Right-handed alpha
Helix 24	AC6	B	572	585	Right-handed alpha
Helix 25	AC7	B	595	626	Right-handed alpha
Helix 26	AC8	B	635	641	Right-handed alpha
Helix 27	AC9	B	653	661	Right-handed alpha
Helix 28	AD1	B	666	676	Right-handed alpha
Helix 29	AD2	B	685	696	Right-handed alpha
Helix 30	AD3	B	706	714	Right-handed alpha
Helix 31	AD4	B	743	756	Right-handed alpha
Helix 32	AD5	B	757	768	Right-handed alpha
Helix 33	AD6	B	792	819	Right-handed alpha
Helix 34	AD7	C	412	415	Right-handed 310
Helix 35	AD8	C	419	432	Right-handed alpha
Helix 36	AD9	C	457	465	Right-handed alpha
Helix 37	AE1	C	478	483	Right-handed alpha
Helix 38	AE2	C	511	515	Right-handed 310
Helix 39	AE3	C	518	542	Right-handed alpha
Helix 40	AE4	C	569	581	Right-handed alpha
Helix 41	AE5	C	592	626	Right-handed alpha
Helix 42	AE6	C	632	637	Right-handed alpha
Helix 43	AE7	C	648	657	Right-handed alpha
Helix 44	AE8	C	660	672	Right-handed alpha
Helix 45	AE9	C	681	692	Right-handed alpha
Helix 46	AF1	C	702	708	Right-handed alpha
Helix 47	AF2	C	709	711	Right-handed 310
Helix 48	AF3	C	738	750	Right-handed alpha
Helix 49	AF4	C	753	764	Right-handed alpha
Helix 50	AF5	C	788	813	Right-handed alpha
Helix 51	AF6	D	416	419	Right-handed 310
Helix 52	AF7	D	424	434	Right-handed alpha
Helix 53	AF8	D	463	468	Right-handed 310
Helix 54	AF9	D	482	486	Right-handed 310
Helix 55	AG1	D	515	519	Right-handed 310
Helix 56	AG2	D	522	547	Right-handed alpha
Helix 57	AG3	D	573	585	Right-handed alpha
Helix 58	AG4	D	595	626	Right-handed alpha
Helix 59	AG5	D	635	643	Right-handed alpha
Helix 60	AG6	D	654	661	Right-handed alpha
Helix 61	AG7	D	664	676	Right-handed alpha
Helix 62	AG8	D	685	696	Right-handed alpha
Helix 63	AG9	D	705	713	Right-handed alpha
Helix 64	AH1	D	744	757	Right-handed alpha
Helix 65	AH2	D	757	768	Right-handed alpha
Helix 66	AH3	D	774	779	Right-handed alpha
Helix 67	AH4	D	792	819	Right-handed alpha
Helix 68	AH5	E	4	38	Right-handed alpha
Helix 69	AH6	E	56	85	Right-handed alpha
Helix 70	AH7	E	88	107	Right-handed alpha
Helix 71	AH8	E	127	159	Right-handed alpha
Helix 72	AH9	F	5	30	Right-handed alpha
Helix 73	AI1	F	92	105	Right-handed alpha
Helix 74	AI2	F	105	128	Right-handed alpha
Helix 75	AI3	F	132	160	Right-handed alpha
Helix 76	AI4	F	177	210	Right-handed alpha
Helix 77	AI5	G	16	41	Right-handed alpha
Helix 78	AI6	G	116	128	Right-handed alpha
Helix 79	AI7	G	128	148	Right-handed alpha
Helix 80	AI8	G	157	184	Right-handed alpha
Helix 81	AI9	G	202	234	Right-handed alpha
Helix 82	AJ1	H	16	41	Right-handed alpha
Helix 83	AJ2	H	116	128	Right-handed alpha
Helix 84	AJ3	H	128	151	Right-handed alpha
Helix 85	AJ4	H	155	184	Right-handed alpha
Helix 86	AJ5	H	202	235	Right-handed alpha

There are 25 sheets in PDB entry 9ZKQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	436	440	first strand
Strand 2	A	391	395	parallel
Strand 3	A	470	471	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	403	404	first strand
Strand 2	A	417	418	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	448	449	first strand
Strand 2	A	456	457	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	486	487	first strand
Strand 2	A	731	732	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	678	679	first strand
Strand 2	A	642	646	parallel
Strand 3	A	696	700	parallel
Strand 4	A	497	501	anti-parallel
Strand 5	A	716	719	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	397	398	first strand
Strand 2	B	442	443	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	407	408	first strand
Strand 2	B	421	422	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	453	454	first strand
Strand 2	B	459	460	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	475	480	first strand
Strand 2	B	730	737	anti-parallel
Strand 3	B	489	491	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	475	480	first strand
Strand 2	B	730	737	anti-parallel
Strand 3	B	496	498	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	646	648	first strand
Strand 2	B	700	705	parallel
Strand 3	B	500	505	anti-parallel
Strand 4	B	720	723	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	391	395	first strand
Strand 2	C	436	440	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	403	404	first strand
Strand 2	C	417	418	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	471	473	first strand
Strand 2	C	729	732	anti-parallel
Strand 3	C	486	487	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	493	494	first strand
Strand 2	C	726	727	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	698	701	first strand
Strand 2	C	496	500	anti-parallel
Strand 3	C	717	719	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	397	399	first strand
Strand 2	D	442	444	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	406	408	first strand
Strand 2	D	421	423	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	475	480	first strand
Strand 2	D	730	736	anti-parallel
Strand 3	D	490	491	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	475	480	first strand
Strand 2	D	730	736	anti-parallel
Strand 3	D	496	498	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	502	505	first strand
Strand 2	D	720	723	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	682	683	first strand
Strand 2	D	646	650	parallel
Strand 3	D	700	702	parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	78	79	first strand
Strand 2	F	65	68	anti-parallel
Strand 3	F	56	61	anti-parallel
Strand 4	F	34	39	anti-parallel
Strand 5	F	174	176	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	101	102	first strand
Strand 2	G	88	90	anti-parallel
Strand 3	G	81	84	anti-parallel
Strand 4	G	45	48	anti-parallel
Strand 5	G	200	201	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	82	83	first strand
Strand 2	H	90	91	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9ZKQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9ZKQ