Analysis of interatomic Contacts of Structural Units in PDB entry:
9ZKR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9ZKR entry

There are 8 chains in PDB entry 9ZKR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 506LYS 813
B
 LYS 511ARG 819
C
 LYS 507LYS 813
D
 SER 510ARG 819
E
 ALA 2PHE 160
F
 PHE 4ALA 210
G
 CYS 15CYS 235
H
 CYS 15CYS 235
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 9ZKR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
511 515Right-handed 310
Helix 2
AA2
A
518 542Right-handed alpha
Helix 3
AA3
A
568 581Right-handed alpha
Helix 4
AA4
A
591 623Right-handed alpha
Helix 5
AA5
A
788 813Right-handed alpha
Helix 6
AA6
B
515 519Right-handed 310
Helix 7
AA7
B
522 545Right-handed alpha
Helix 8
AA8
B
572 585Right-handed alpha
Helix 9
AA9
B
595 626Right-handed alpha
Helix 10
AB1
B
792 819Right-handed alpha
Helix 11
AB2
C
511 515Right-handed 310
Helix 12
AB3
C
518 542Right-handed alpha
Helix 13
AB4
C
568 581Right-handed alpha
Helix 14
AB5
C
591 623Right-handed alpha
Helix 15
AB6
C
784 787Right-handed 310
Helix 16
AB7
C
788 813Right-handed alpha
Helix 17
AB8
D
515 519Right-handed 310
Helix 18
AB9
D
522 547Right-handed alpha
Helix 19
AC1
D
573 585Right-handed alpha
Helix 20
AC2
D
595 626Right-handed alpha
Helix 21
AC3
D
792 819Right-handed alpha
Helix 22
AC4
E
4 38Right-handed alpha
Helix 23
AC5
E
56 85Right-handed alpha
Helix 24
AC6
E
87 106Right-handed alpha
Helix 25
AC7
E
127 159Right-handed alpha
Helix 26
AC8
F
5 28Right-handed alpha
Helix 27
AC9
F
93 105Right-handed alpha
Helix 28
AD1
F
105 126Right-handed alpha
Helix 29
AD2
F
132 161Right-handed alpha
Helix 30
AD3
F
177 210Right-handed alpha
Helix 31
AD4
G
16 40Right-handed alpha
Helix 32
AD5
G
116 128Right-handed alpha
Helix 33
AD6
G
128 150Right-handed alpha
Helix 34
AD7
G
156 183Right-handed alpha
Helix 35
AD8
G
202 234Right-handed alpha
Helix 36
AD9
H
16 40Right-handed alpha
Helix 37
AE1
H
116 128Right-handed alpha
Helix 38
AE2
H
128 151Right-handed alpha
Helix 39
AE3
H
155 184Right-handed alpha
Helix 40
AE4
H
202 235Right-handed alpha
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There are 4 sheets in PDB entry 9ZKR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
37 38first strand
Strand 2
F
57 58anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
45 47first strand
Strand 2
G
81 84anti-parallel
Strand 3
G
89 93anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
45 48first strand
Strand 2
H
81 84anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
88 89first strand
Strand 2
H
101 102anti-parallel
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