Analysis of interatomic Contacts of Structural Units in PDB entry:
9ZM4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9ZM4 entry

There are 6 chains in PDB entry 9ZM4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 153	ARG 310
B	ASP 152	ARG 310
C	ALA 151	ARG 310
D	HIS 146	ARG 310
E	GLY 150	ARG 310
F	GLY 150	ARG 310

There are 18 helices in PDB entry 9ZM4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	160	167	Right-handed alpha
Helix 2	AA2	A	238	244	Right-handed alpha
Helix 3	AA3	A	302	309	Right-handed alpha
Helix 4	AA4	B	160	167	Right-handed alpha
Helix 5	AA5	B	237	244	Right-handed alpha
Helix 6	AA6	B	302	310	Right-handed alpha
Helix 7	AA7	C	160	167	Right-handed alpha
Helix 8	AA8	C	238	244	Right-handed alpha
Helix 9	AA9	C	302	309	Right-handed alpha
Helix 10	AB1	D	160	167	Right-handed alpha
Helix 11	AB2	D	238	244	Right-handed alpha
Helix 12	AB3	D	301	309	Right-handed alpha
Helix 13	AB4	E	160	167	Right-handed alpha
Helix 14	AB5	E	237	244	Right-handed alpha
Helix 15	AB6	E	302	310	Right-handed alpha
Helix 16	AB7	F	160	167	Right-handed alpha
Helix 17	AB8	F	238	244	Right-handed alpha
Helix 18	AB9	F	302	309	Right-handed alpha

There are 24 sheets in PDB entry 9ZM4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	154	159	first strand
Strand 2	A	210	217	parallel
Strand 3	A	192	197	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	173	first strand
Strand 2	A	179	183	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	223	226	first strand
Strand 2	A	229	237	anti-parallel
Strand 3	A	287	294	parallel
Strand 4	A	269	272	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	245	250	first strand
Strand 2	A	255	260	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	155	159	first strand
Strand 2	B	213	217	parallel
Strand 3	B	193	194	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	169	171	first strand
Strand 2	B	181	183	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	223	226	first strand
Strand 2	B	229	236	anti-parallel
Strand 3	B	287	293	parallel
Strand 4	B	269	272	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	245	250	first strand
Strand 2	B	255	260	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	153	159	first strand
Strand 2	C	210	217	parallel
Strand 3	C	192	197	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	169	173	first strand
Strand 2	C	179	183	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	223	226	first strand
Strand 2	C	229	237	anti-parallel
Strand 3	C	284	294	parallel
Strand 4	C	269	278	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	245	250	first strand
Strand 2	C	255	260	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	153	159	first strand
Strand 2	D	211	217	parallel
Strand 3	D	192	196	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	169	173	first strand
Strand 2	D	179	183	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	224	226	first strand
Strand 2	D	229	237	anti-parallel
Strand 3	D	287	294	parallel
Strand 4	D	269	272	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	245	250	first strand
Strand 2	D	255	260	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	153	159	first strand
Strand 2	E	210	217	parallel
Strand 3	E	193	197	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	169	173	first strand
Strand 2	E	179	183	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	223	226	first strand
Strand 2	E	229	236	anti-parallel
Strand 3	E	287	293	parallel
Strand 4	E	269	272	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	245	250	first strand
Strand 2	E	255	260	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	152	159	first strand
Strand 2	F	210	217	parallel
Strand 3	F	192	197	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	169	173	first strand
Strand 2	F	179	183	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	223	226	first strand
Strand 2	F	229	237	anti-parallel
Strand 3	F	287	294	parallel
Strand 4	F	269	272	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	245	250	first strand
Strand 2	F	255	260	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9ZM4

Analysis of interatomic Contacts of Structural Units in PDB entry:
9ZM4