Analysis of interatomic Contacts of Structural Units in PDB entry:
9ZM5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9ZM5 entry

There are 4 chains in PDB entry 9ZM5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 27GLY 529
B
 GLU 41ASN 70
C
 LYS 27GLY 531
D
 GLU 41SER 71
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 54 helices in PDB entry 9ZM5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
42 58Right-handed alpha
Helix 2
AA2
A
68 77Right-handed alpha
Helix 3
AA3
A
78 80Right-handed 310
Helix 4
AA4
A
93 98Right-handed alpha
Helix 5
AA5
A
108 113Right-handed alpha
Helix 6
AA6
A
116 122Right-handed alpha
Helix 7
AA7
A
154 156Right-handed 310
Helix 8
AA8
A
157 167Right-handed alpha
Helix 9
AA9
A
179 182Right-handed 310
Helix 10
AB1
A
183 190Right-handed alpha
Helix 11
AB2
A
211 227Right-handed alpha
Helix 12
AB3
A
235 244Right-handed alpha
Helix 13
AB4
A
254 256Right-handed 310
Helix 14
AB5
A
257 262Right-handed alpha
Helix 15
AB6
A
298 309Right-handed alpha
Helix 16
AB7
A
312 321Right-handed alpha
Helix 17
AB8
A
330 338Right-handed alpha
Helix 18
AB9
A
340 352Right-handed alpha
Helix 19
AC1
A
361 379Right-handed alpha
Helix 20
AC2
A
382 424Right-handed alpha
Helix 21
AC3
A
427 437Right-handed 310
Helix 22
AC4
A
452 473Right-handed alpha
Helix 23
AC5
A
473 485Right-handed alpha
Helix 24
AC6
A
489 494Right-handed alpha
Helix 25
AC7
A
499 504Right-handed alpha
Helix 26
AC8
A
504 527Right-handed alpha
Helix 27
AC9
B
46 69Right-handed alpha
Helix 28
AD1
C
42 56Right-handed alpha
Helix 29
AD2
C
68 78Right-handed alpha
Helix 30
AD3
C
93 98Right-handed alpha
Helix 31
AD4
C
108 113Right-handed alpha
Helix 32
AD5
C
116 122Right-handed alpha
Helix 33
AD6
C
154 156Right-handed 310
Helix 34
AD7
C
157 167Right-handed alpha
Helix 35
AD8
C
179 188Right-handed alpha
Helix 36
AD9
C
189 191Right-handed 310
Helix 37
AE1
C
211 227Right-handed alpha
Helix 38
AE2
C
237 242Right-handed alpha
Helix 39
AE3
C
243 246Right-handed 310
Helix 40
AE4
C
254 256Right-handed 310
Helix 41
AE5
C
257 264Right-handed alpha
Helix 42
AE6
C
298 309Right-handed alpha
Helix 43
AE7
C
312 321Right-handed alpha
Helix 44
AE8
C
330 338Right-handed alpha
Helix 45
AE9
C
340 351Right-handed alpha
Helix 46
AF1
C
361 379Right-handed alpha
Helix 47
AF2
C
382 424Right-handed alpha
Helix 48
AF3
C
425 432Right-handed alpha
Helix 49
AF4
C
433 437Right-handed 310
Helix 50
AF5
C
454 475Right-handed alpha
Helix 51
AF6
C
475 488Right-handed alpha
Helix 52
AF7
C
488 496Right-handed alpha
Helix 53
AF8
C
501 531Right-handed alpha
Helix 54
AF9
D
42 65Right-handed alpha
Back to top of page

There are 10 sheets in PDB entry 9ZM5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 64first strand
Strand 2
A
32 37parallel
Strand 3
A
85 89parallel
Strand 4
A
284 292anti-parallel
Strand 5
A
132 137anti-parallel
Strand 6
A
327 328anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 64first strand
Strand 2
A
32 37parallel
Strand 3
A
85 89parallel
Strand 4
A
284 292anti-parallel
Strand 5
A
354 355parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 125first strand
Strand 2
A
128 129anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
171 173first strand
Strand 2
A
248 253parallel
Strand 3
A
140 144anti-parallel
Strand 4
A
268 271anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
193 198first strand
Strand 2
A
201 208anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
61 64first strand
Strand 2
C
33 36parallel
Strand 3
C
85 89parallel
Strand 4
C
284 292anti-parallel
Strand 5
C
132 137anti-parallel
Strand 6
C
327 328anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
61 64first strand
Strand 2
C
33 36parallel
Strand 3
C
85 89parallel
Strand 4
C
284 292anti-parallel
Strand 5
C
354 355parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
124 125first strand
Strand 2
C
128 129anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
171 173first strand
Strand 2
C
248 253parallel
Strand 3
C
140 144anti-parallel
Strand 4
C
268 271anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
193 198first strand
Strand 2
C
201 208anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il