Analysis of interatomic Contacts of Structural Units in PDB entry:
9ZOF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9ZOF entry

There are 13 chains in PDB entry 9ZOF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ARG 880
B	MET 1	GLY 1121
C	MET 1	ARG 393
G	LYS 2	LYS 123
H	LYS 7	GLY 84
K	MET 1	ILE 86
L	MET 1	ILE 90
N	MET 1	ILE 66
Y	VAL 38	ASP 81
E	MET 1	ILE 178
D	PRO 2	ALA 262
P	ALA 2	ILE 48
F	MET 1	LYS 109

There are129 helices in PDB entry 9ZOF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	15	23	Right-handed alpha
Helix 2	AA2	A	86	95	Right-handed alpha
Helix 3	AA3	A	107	122	Right-handed alpha
Helix 4	AA4	A	125	143	Right-handed alpha
Helix 5	AA5	A	176	186	Right-handed alpha
Helix 6	AA6	A	188	194	Right-handed alpha
Helix 7	AA7	A	203	206	Right-handed 310
Helix 8	AA8	A	224	228	Right-handed 310
Helix 9	AA9	A	233	256	Right-handed alpha
Helix 10	AB1	A	258	278	Right-handed alpha
Helix 11	AB2	A	297	302	Right-handed alpha
Helix 12	AB3	A	307	312	Right-handed alpha
Helix 13	AB4	A	340	347	Right-handed alpha
Helix 14	AB5	A	357	367	Right-handed alpha
Helix 15	AB6	A	393	401	Right-handed alpha
Helix 16	AB7	A	426	428	Right-handed 310
Helix 17	AB8	A	449	454	Right-handed alpha
Helix 18	AB9	A	469	480	Right-handed alpha
Helix 19	AC1	A	481	486	Right-handed 310
Helix 20	AC2	A	500	511	Right-handed alpha
Helix 21	AC3	A	517	527	Right-handed alpha
Helix 22	AC4	A	547	554	Right-handed alpha
Helix 23	AC5	A	599	604	Right-handed alpha
Helix 24	AC6	A	610	642	Right-handed alpha
Helix 25	AC7	A	647	651	Right-handed 310
Helix 26	AC8	A	654	680	Right-handed alpha
Helix 27	AC9	A	694	718	Right-handed alpha
Helix 28	AD1	A	723	731	Right-handed alpha
Helix 29	AD2	A	736	745	Right-handed alpha
Helix 30	AD3	A	791	827	Right-handed alpha
Helix 31	AD4	A	867	877	Right-handed alpha
Helix 32	AD5	A	878	880	Right-handed 310
Helix 33	AD6	B	3	18	Right-handed alpha
Helix 34	AD7	B	21	34	Right-handed alpha
Helix 35	AD8	B	34	44	Right-handed alpha
Helix 36	AD9	B	79	86	Right-handed alpha
Helix 37	AE1	B	132	139	Right-handed alpha
Helix 38	AE2	B	221	228	Right-handed alpha
Helix 39	AE3	B	232	241	Right-handed alpha
Helix 40	AE4	B	243	248	Right-handed alpha
Helix 41	AE5	B	250	256	Right-handed alpha
Helix 42	AE6	B	262	275	Right-handed alpha
Helix 43	AE7	B	279	295	Right-handed alpha
Helix 44	AE8	B	296	300	Right-handed 310
Helix 45	AE9	B	302	304	Right-handed 310
Helix 46	AF1	B	305	325	Right-handed alpha
Helix 47	AF2	B	343	374	Right-handed alpha
Helix 48	AF3	B	378	383	Right-handed 310
Helix 49	AF4	B	385	399	Right-handed alpha
Helix 50	AF5	B	401	405	Right-handed 310
Helix 51	AF6	B	416	424	Right-handed alpha
Helix 52	AF7	B	444	448	Right-handed 310
Helix 53	AF8	B	479	491	Right-handed alpha
Helix 54	AF9	B	494	504	Right-handed alpha
Helix 55	AG1	B	508	514	Right-handed alpha
Helix 56	AG2	B	530	544	Right-handed alpha
Helix 57	AG3	B	588	597	Right-handed alpha
Helix 58	AG4	B	601	608	Right-handed alpha
Helix 59	AG5	B	617	622	Right-handed 310
Helix 60	AG6	B	627	631	Right-handed 310
Helix 61	AG7	B	641	646	Right-handed 310
Helix 62	AG8	B	649	653	Right-handed 310
Helix 63	AG9	B	655	659	Right-handed 310
Helix 64	AH1	B	660	671	Right-handed alpha
Helix 65	AH2	B	740	745	Right-handed alpha
Helix 66	AH3	B	785	789	Right-handed 310
Helix 67	AH4	B	911	917	Right-handed alpha
Helix 68	AH5	B	918	935	Right-handed alpha
Helix 69	AH6	B	948	959	Right-handed alpha
Helix 70	AH7	B	995	999	Right-handed 310
Helix 71	AH8	B	1028	1038	Right-handed alpha
Helix 72	AH9	B	1041	1049	Right-handed alpha
Helix 73	AI1	B	1094	1106	Right-handed alpha
Helix 74	AI2	C	3	16	Right-handed alpha
Helix 75	AI3	C	22	35	Right-handed alpha
Helix 76	AI4	C	42	60	Right-handed alpha
Helix 77	AI5	C	67	78	Right-handed alpha
Helix 78	AI6	C	79	82	Right-handed 310
Helix 79	AI7	C	101	111	Right-handed alpha
Helix 80	AI8	C	131	141	Right-handed alpha
Helix 81	AI9	C	146	149	Right-handed 310
Helix 82	AJ1	C	168	176	Right-handed alpha
Helix 83	AJ2	C	178	190	Right-handed alpha
Helix 84	AJ3	C	216	226	Right-handed alpha
Helix 85	AJ4	C	255	261	Right-handed alpha
Helix 86	AJ5	C	266	270	Right-handed 310
Helix 87	AJ6	C	275	282	Right-handed alpha
Helix 88	AJ7	C	283	302	Right-handed alpha
Helix 89	AJ8	C	307	319	Right-handed alpha
Helix 90	AJ9	C	328	333	Right-handed alpha
Helix 91	AK1	C	339	346	Right-handed alpha
Helix 92	AK2	C	349	359	Right-handed alpha
Helix 93	AK3	C	367	374	Right-handed alpha
Helix 94	AK4	C	379	384	Right-handed 310
Helix 95	AK5	G	42	44	Right-handed 310
Helix 96	AK6	H	24	36	Right-handed alpha
Helix 97	AK7	H	38	42	Right-handed 310
Helix 98	AK8	H	49	55	Right-handed alpha
Helix 99	AK9	K	4	15	Right-handed alpha
Helix 100	AL1	K	19	36	Right-handed alpha
Helix 101	AL2	K	51	63	Right-handed alpha
Helix 102	AL3	L	21	34	Right-handed alpha
Helix 103	AL4	L	64	90	Right-handed alpha
Helix 104	AL5	N	14	16	Right-handed 310
Helix 105	AL6	N	17	27	Right-handed alpha
Helix 106	AL7	N	30	38	Right-handed alpha
Helix 107	AL8	N	42	51	Right-handed alpha
Helix 108	AL9	N	55	60	Right-handed alpha
Helix 109	AM1	Y	39	58	Right-handed alpha
Helix 110	AM2	Y	62	79	Right-handed alpha
Helix 111	AM3	E	14	18	Right-handed 310
Helix 112	AM4	E	21	34	Right-handed alpha
Helix 113	AM5	E	110	114	Right-handed alpha
Helix 114	AM6	E	173	178	Right-handed alpha
Helix 115	AM7	D	21	35	Right-handed alpha
Helix 116	AM8	D	54	64	Right-handed alpha
Helix 117	AM9	D	71	75	Right-handed 310
Helix 118	AN1	D	78	83	Right-handed alpha
Helix 119	AN2	D	153	157	Right-handed 310
Helix 120	AN3	D	199	203	Right-handed 310
Helix 121	AN4	D	207	213	Right-handed alpha
Helix 122	AN5	D	237	261	Right-handed alpha
Helix 123	AN6	P	16	20	Right-handed 310
Helix 124	AN7	F	14	27	Right-handed alpha
Helix 125	AN8	F	32	46	Right-handed alpha
Helix 126	AN9	F	49	64	Right-handed alpha
Helix 127	AO1	F	66	76	Right-handed alpha
Helix 128	AO2	F	80	88	Right-handed alpha
Helix 129	AO3	F	97	107	Right-handed alpha

There are 40 sheets in PDB entry 9ZOF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1111	1116	first strand
Strand 2	A	4	10	anti-parallel
Strand 3	C	361	362	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	73	82	first strand
Strand 2	A	208	214	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	145	146	first strand
Strand 2	A	151	152	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	156	159	first strand
Strand 2	A	163	166	anti-parallel
Strand 3	A	173	174	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	316	318	first strand
Strand 2	B	1025	1027	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1001	1003	first strand
Strand 2	A	321	328	anti-parallel
Strand 3	A	461	465	anti-parallel
Strand 4	A	416	420	anti-parallel
Strand 5	A	430	437	anti-parallel
Strand 6	A	336	339	parallel
Strand 7	A	443	445	anti-parallel
Strand 8	A	321	328	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	348	352	first strand
Strand 2	A	406	410	anti-parallel
Strand 3	A	375	379	anti-parallel
Strand 4	A	385	387	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	539	541	first strand
Strand 2	G	68	74	anti-parallel
Strand 3	G	85	91	anti-parallel
Strand 4	G	78	79	anti-parallel

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There are 10 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	539	541	first strand
Strand 2	G	68	74	anti-parallel
Strand 3	G	115	122	anti-parallel
Strand 4	G	51	57	anti-parallel
Strand 5	G	5	15	anti-parallel
Strand 6	G	22	28	anti-parallel
Strand 7	G	36	40	anti-parallel
Strand 8	G	94	100	anti-parallel
Strand 9	G	85	91	anti-parallel
Strand 10	G	78	79	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	562	565	first strand
Strand 2	A	585	589	anti-parallel
Strand 3	A	592	595	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	748	749	first strand
Strand 2	A	781	782	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	830	832	first strand
Strand 2	A	838	840	anti-parallel
Strand 3	A	845	847	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	47	first strand
Strand 2	B	53	62	anti-parallel
Strand 3	B	91	102	anti-parallel
Strand 4	B	110	118	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	67	first strand
Strand 2	B	76	77	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	150	152	first strand
Strand 2	B	155	159	anti-parallel
Strand 3	B	409	411	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	339	342	first strand
Strand 2	B	161	165	anti-parallel
Strand 3	B	426	429	parallel
Strand 4	B	465	467	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	170	174	first strand
Strand 2	B	183	190	anti-parallel
Strand 3	B	195	202	anti-parallel
Strand 4	B	208	212	anti-parallel
Strand 5	B	219	220	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	473	474	first strand
Strand 2	B	573	581	anti-parallel
Strand 3	B	611	614	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	584	585	first strand
Strand 2	B	573	581	anti-parallel
Strand 3	B	637	639	anti-parallel
Strand 4	B	624	625	parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	523	528	first strand
Strand 2	B	516	520	anti-parallel
Strand 3	B	562	567	parallel
Strand 4	B	552	557	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	689	693	first strand
Strand 2	B	750	759	anti-parallel
Strand 3	B	858	868	anti-parallel
Strand 4	B	843	852	anti-parallel
Strand 5	B	801	802	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	689	693	first strand
Strand 2	B	750	759	anti-parallel
Strand 3	B	858	868	anti-parallel
Strand 4	B	843	852	anti-parallel
Strand 5	P	34	35	anti-parallel
Strand 6	P	5	6	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	701	702	first strand
Strand 2	B	938	939	parallel

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There are 9 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	718	719	first strand
Strand 2	B	988	991	anti-parallel
Strand 3	B	875	877	anti-parallel
Strand 4	B	884	890	anti-parallel
Strand 5	B	736	739	parallel
Strand 6	B	906	908	anti-parallel
Strand 7	B	722	724	parallel
Strand 8	B	982	985	anti-parallel
Strand 9	B	966	967	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	807	809	first strand
Strand 2	B	835	836	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	812	813	first strand
Strand 2	B	831	832	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1054	1060	first strand
Strand 2	B	1087	1093	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	238	242	first strand
Strand 2	C	247	251	anti-parallel
Strand 3	C	120	123	anti-parallel
Strand 4	C	271	272	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	151	157	first strand
Strand 2	C	162	167	anti-parallel
Strand 3	C	203	206	anti-parallel
Strand 4	C	196	200	anti-parallel

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There are 7 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	78	82	first strand
Strand 2	K	67	72	anti-parallel
Strand 3	C	385	388	anti-parallel
Strand 4	E	57	59	anti-parallel
Strand 5	E	66	77	anti-parallel
Strand 6	E	43	53	anti-parallel
Strand 7	E	38	39	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	8	13	first strand
Strand 2	E	66	77	anti-parallel
Strand 3	E	2	5	anti-parallel
Strand 4	F	10	12	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	19	22	first strand
Strand 2	H	62	69	anti-parallel
Strand 3	H	73	82	anti-parallel
Strand 4	H	44	46	parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	3	8	first strand
Strand 2	L	12	18	anti-parallel
Strand 3	L	52	59	anti-parallel
Strand 4	L	38	44	anti-parallel

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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	83	88	first strand
Strand 2	E	141	148	anti-parallel
Strand 3	E	158	162	anti-parallel
Strand 4	E	105	109	parallel
Strand 5	E	96	99	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	118	119	first strand
Strand 2	E	128	129	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	7	first strand
Strand 2	D	12	17	anti-parallel
Strand 3	D	217	232	anti-parallel
Strand 4	D	159	161	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	7	first strand
Strand 2	D	12	17	anti-parallel
Strand 3	D	217	232	anti-parallel
Strand 4	D	164	172	anti-parallel

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There are 5 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	115	116	first strand
Strand 2	D	93	101	anti-parallel
Strand 3	D	138	148	anti-parallel
Strand 4	D	38	49	anti-parallel
Strand 5	P	43	46	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	107	108	first strand
Strand 2	D	132	133	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	188	191	first strand
Strand 2	D	194	197	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9ZOF

Analysis of interatomic Contacts of Structural Units in PDB entry:
9ZOF