Analysis of interatomic Contacts of Structural Units in PDB entry:
9ZPC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9ZPC entry

There are 4 chains in PDB entry 9ZPC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 40	LYS 1358
B	PHE 7	ALA 274
C	VAL 33	GLY 461
D	GLN 13	PHE 447

There are 66 helices in PDB entry 9ZPC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	67	79	Right-handed alpha
Helix 2	AA2	A	110	116	Right-handed alpha
Helix 3	AA3	A	121	142	Right-handed alpha
Helix 4	AA4	A	180	188	Right-handed alpha
Helix 5	AA5	A	236	253	Right-handed alpha
Helix 6	AA6	A	260	269	Right-handed alpha
Helix 7	AA7	A	274	279	Right-handed alpha
Helix 8	AA8	A	283	294	Right-handed alpha
Helix 9	AA9	A	297	301	Right-handed 310
Helix 10	AB1	A	303	311	Right-handed alpha
Helix 11	AB2	A	317	323	Right-handed alpha
Helix 12	AB3	A	323	331	Right-handed alpha
Helix 13	AB4	A	338	357	Right-handed alpha
Helix 14	AB5	A	374	387	Right-handed alpha
Helix 15	AB6	A	391	406	Right-handed alpha
Helix 16	AB7	A	407	409	Right-handed 310
Helix 17	AB8	A	410	418	Right-handed alpha
Helix 18	AB9	A	418	427	Right-handed alpha
Helix 19	AC1	A	430	447	Right-handed alpha
Helix 20	AC2	A	452	456	Right-handed 310
Helix 21	AC3	A	457	462	Right-handed alpha
Helix 22	AC4	A	462	473	Right-handed alpha
Helix 23	AC5	A	475	501	Right-handed alpha
Helix 24	AC6	A	525	547	Right-handed alpha
Helix 25	AC7	A	549	560	Right-handed alpha
Helix 26	AC8	A	560	569	Right-handed alpha
Helix 27	AC9	A	569	585	Right-handed alpha
Helix 28	AD1	A	590	608	Right-handed alpha
Helix 29	AD2	A	609	611	Right-handed 310
Helix 30	AD3	A	612	625	Right-handed alpha
Helix 31	AD4	A	628	645	Right-handed alpha
Helix 32	AD5	A	649	661	Right-handed alpha
Helix 33	AD6	A	662	666	Right-handed 310
Helix 34	AD7	A	669	686	Right-handed alpha
Helix 35	AD8	A	687	700	Right-handed alpha
Helix 36	AD9	A	712	720	Right-handed alpha
Helix 37	AE1	A	725	735	Right-handed alpha
Helix 38	AE2	A	737	754	Right-handed alpha
Helix 39	AE3	A	764	777	Right-handed alpha
Helix 40	AE4	A	780	790	Right-handed alpha
Helix 41	AE5	A	790	803	Right-handed alpha
Helix 42	AE6	A	1138	1142	Right-handed 310
Helix 43	AE7	A	1272	1276	Right-handed 310
Helix 44	AE8	B	34	41	Right-handed alpha
Helix 45	AE9	B	42	47	Right-handed 310
Helix 46	AF1	B	98	100	Right-handed 310
Helix 47	AF2	B	131	135	Right-handed 310
Helix 48	AF3	B	172	184	Right-handed alpha
Helix 49	AF4	B	190	212	Right-handed alpha
Helix 50	AF5	B	264	272	Right-handed alpha
Helix 51	AF6	C	41	43	Right-handed 310
Helix 52	AF7	C	136	138	Right-handed 310
Helix 53	AF8	C	192	329	Right-handed alpha
Helix 54	AF9	C	360	379	Right-handed alpha
Helix 55	AG1	C	405	407	Right-handed 310
Helix 56	AG2	C	418	441	Right-handed alpha
Helix 57	AG3	C	450	461	Right-handed alpha
Helix 58	AG4	D	28	34	Right-handed 310
Helix 59	AG5	D	35	43	Right-handed alpha
Helix 60	AG6	D	111	130	Right-handed alpha
Helix 61	AG7	D	137	171	Right-handed alpha
Helix 62	AG8	D	176	267	Right-handed alpha
Helix 63	AG9	D	268	274	Right-handed alpha
Helix 64	AH1	D	299	322	Right-handed alpha
Helix 65	AH2	D	367	387	Right-handed alpha
Helix 66	AH3	D	425	447	Right-handed alpha

There are 18 sheets in PDB entry 9ZPC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	44	first strand
Strand 2	A	49	53	anti-parallel
Strand 3	A	101	104	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	85	first strand
Strand 2	A	162	165	parallel
Strand 3	A	154	156	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	985	989	first strand
Strand 2	A	1354	1357	anti-parallel
Strand 3	A	1343	1349	anti-parallel
Strand 4	A	1332	1339	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	996	1002	first strand
Strand 2	A	1007	1012	anti-parallel
Strand 3	A	1018	1021	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1048	1050	first strand
Strand 2	A	1056	1060	anti-parallel
Strand 3	A	1066	1072	anti-parallel
Strand 4	A	1081	1083	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1101	1104	first strand
Strand 2	A	1111	1114	anti-parallel
Strand 3	A	1121	1125	anti-parallel
Strand 4	A	1131	1135	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1144	1149	first strand
Strand 2	A	1155	1160	anti-parallel
Strand 3	A	1165	1169	anti-parallel
Strand 4	A	1174	1176	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1187	1192	first strand
Strand 2	A	1199	1204	anti-parallel
Strand 3	A	1209	1214	anti-parallel
Strand 4	A	1219	1225	anti-parallel
Strand 5	A	1298	1305	parallel
Strand 6	A	1288	1295	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1242	1250	first strand
Strand 2	A	1253	1260	anti-parallel
Strand 3	A	1265	1269	anti-parallel
Strand 4	A	1277	1278	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	11	first strand
Strand 2	B	232	234	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	89	96	first strand
Strand 2	B	18	28	anti-parallel
Strand 3	B	215	221	anti-parallel
Strand 4	B	141	145	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	68	69	first strand
Strand 2	B	58	65	anti-parallel
Strand 3	B	105	115	anti-parallel
Strand 4	B	118	128	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	45	51	first strand
Strand 2	C	152	157	anti-parallel
Strand 3	C	160	163	anti-parallel
Strand 4	C	139	141	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	64	69	first strand
Strand 2	C	112	119	anti-parallel
Strand 3	C	131	134	anti-parallel
Strand 4	D	81	82	parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	332	333	first strand
Strand 2	C	339	341	anti-parallel
Strand 3	C	344	346	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	386	387	first strand
Strand 2	C	394	396	anti-parallel
Strand 3	C	409	411	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	277	279	first strand
Strand 2	D	282	284	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	396	397	first strand
Strand 2	D	402	403	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9ZPC

Analysis of interatomic Contacts of Structural Units in PDB entry:
9ZPC