Analysis of interatomic Contacts of Structural Units in PDB entry:
9ZPD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9ZPD entry

There are 5 chains in PDB entry 9ZPD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 40	LYS 1358
B	PHE 7	ALA 274
C	LEU 31	GLY 461
D	THR 11	PHE 447
E	ASP 488	SER 515

There are 74 helices in PDB entry 9ZPD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	67	81	Right-handed alpha
Helix 2	AA2	A	109	115	Right-handed alpha
Helix 3	AA3	A	121	143	Right-handed alpha
Helix 4	AA4	A	150	152	Right-handed 310
Helix 5	AA5	A	180	187	Right-handed alpha
Helix 6	AA6	A	236	253	Right-handed alpha
Helix 7	AA7	A	260	270	Right-handed alpha
Helix 8	AA8	A	274	281	Right-handed alpha
Helix 9	AA9	A	283	294	Right-handed alpha
Helix 10	AB1	A	297	301	Right-handed 310
Helix 11	AB2	A	303	312	Right-handed alpha
Helix 12	AB3	A	317	323	Right-handed alpha
Helix 13	AB4	A	323	328	Right-handed alpha
Helix 14	AB5	A	329	337	Right-handed 310
Helix 15	AB6	A	338	349	Right-handed alpha
Helix 16	AB7	A	349	357	Right-handed alpha
Helix 17	AB8	A	374	387	Right-handed alpha
Helix 18	AB9	A	391	406	Right-handed alpha
Helix 19	AC1	A	407	409	Right-handed 310
Helix 20	AC2	A	410	418	Right-handed alpha
Helix 21	AC3	A	418	427	Right-handed alpha
Helix 22	AC4	A	430	446	Right-handed alpha
Helix 23	AC5	A	452	456	Right-handed 310
Helix 24	AC6	A	462	467	Right-handed alpha
Helix 25	AC7	A	468	472	Right-handed 310
Helix 26	AC8	A	475	503	Right-handed alpha
Helix 27	AC9	A	525	546	Right-handed alpha
Helix 28	AD1	A	549	559	Right-handed alpha
Helix 29	AD2	A	563	567	Right-handed 310
Helix 30	AD3	A	569	576	Right-handed alpha
Helix 31	AD4	A	576	582	Right-handed alpha
Helix 32	AD5	A	583	587	Right-handed 310
Helix 33	AD6	A	590	609	Right-handed alpha
Helix 34	AD7	A	612	624	Right-handed alpha
Helix 35	AD8	A	628	645	Right-handed alpha
Helix 36	AD9	A	649	661	Right-handed alpha
Helix 37	AE1	A	662	666	Right-handed 310
Helix 38	AE2	A	668	686	Right-handed alpha
Helix 39	AE3	A	687	694	Right-handed alpha
Helix 40	AE4	A	694	700	Right-handed alpha
Helix 41	AE5	A	701	703	Right-handed 310
Helix 42	AE6	A	712	718	Right-handed alpha
Helix 43	AE7	A	725	735	Right-handed alpha
Helix 44	AE8	A	737	753	Right-handed alpha
Helix 45	AE9	A	764	777	Right-handed alpha
Helix 46	AF1	A	780	790	Right-handed alpha
Helix 47	AF2	A	790	804	Right-handed alpha
Helix 48	AF3	A	940	968	Right-handed alpha
Helix 49	AF4	A	1272	1276	Right-handed 310
Helix 50	AF5	B	34	41	Right-handed alpha
Helix 51	AF6	B	42	45	Right-handed 310
Helix 52	AF7	B	98	100	Right-handed 310
Helix 53	AF8	B	172	184	Right-handed alpha
Helix 54	AF9	B	191	212	Right-handed alpha
Helix 55	AG1	B	264	273	Right-handed alpha
Helix 56	AG2	C	41	43	Right-handed 310
Helix 57	AG3	C	136	138	Right-handed 310
Helix 58	AG4	C	192	324	Right-handed alpha
Helix 59	AG5	C	325	327	Right-handed 310
Helix 60	AG6	C	349	353	Right-handed 310
Helix 61	AG7	C	357	379	Right-handed alpha
Helix 62	AG8	C	405	407	Right-handed 310
Helix 63	AG9	C	418	440	Right-handed alpha
Helix 64	AH1	C	449	461	Right-handed alpha
Helix 65	AH2	D	28	33	Right-handed alpha
Helix 66	AH3	D	35	43	Right-handed alpha
Helix 67	AH4	D	111	130	Right-handed alpha
Helix 68	AH5	D	137	172	Right-handed alpha
Helix 69	AH6	D	176	265	Right-handed alpha
Helix 70	AH7	D	268	274	Right-handed alpha
Helix 71	AH8	D	299	322	Right-handed alpha
Helix 72	AH9	D	362	387	Right-handed alpha
Helix 73	AI1	D	421	447	Right-handed alpha
Helix 74	AI2	E	489	515	Right-handed alpha

There are 23 sheets in PDB entry 9ZPD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	45	first strand
Strand 2	A	48	53	anti-parallel
Strand 3	A	101	104	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	85	first strand
Strand 2	A	162	165	parallel
Strand 3	A	154	156	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	996	1002	first strand
Strand 2	A	1007	1012	anti-parallel
Strand 3	A	1017	1021	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1048	1050	first strand
Strand 2	A	1056	1060	anti-parallel
Strand 3	A	1065	1071	anti-parallel
Strand 4	A	1082	1084	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1048	1050	first strand
Strand 2	A	1056	1060	anti-parallel
Strand 3	A	1065	1071	anti-parallel
Strand 4	A	1088	1089	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1101	1104	first strand
Strand 2	A	1111	1114	anti-parallel
Strand 3	A	1122	1125	anti-parallel
Strand 4	A	1130	1134	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1144	1149	first strand
Strand 2	A	1156	1160	anti-parallel
Strand 3	A	1165	1169	anti-parallel
Strand 4	A	1174	1179	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1199	1201	first strand
Strand 2	A	1212	1214	anti-parallel
Strand 3	A	1220	1223	anti-parallel
Strand 4	A	1299	1300	parallel
Strand 5	A	1293	1294	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1242	1248	first strand
Strand 2	A	1255	1260	anti-parallel
Strand 3	A	1265	1269	anti-parallel
Strand 4	A	1277	1278	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1288	1290	first strand
Strand 2	A	1303	1305	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1332	1336	first strand
Strand 2	A	1345	1349	anti-parallel
Strand 3	A	1354	1357	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	11	first strand
Strand 2	B	232	234	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	86	96	first strand
Strand 2	B	18	27	anti-parallel
Strand 3	B	215	220	anti-parallel
Strand 4	B	140	145	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	68	69	first strand
Strand 2	B	58	65	anti-parallel
Strand 3	B	105	115	anti-parallel
Strand 4	B	118	121	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	68	69	first strand
Strand 2	B	58	65	anti-parallel
Strand 3	B	105	115	anti-parallel
Strand 4	B	125	128	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	45	51	first strand
Strand 2	C	152	157	anti-parallel
Strand 3	C	161	163	anti-parallel
Strand 4	C	139	141	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	76	79	first strand
Strand 2	C	63	71	anti-parallel
Strand 3	C	112	121	anti-parallel
Strand 4	C	124	134	anti-parallel
Strand 5	D	80	82	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	188	189	first strand
Strand 2	D	25	26	parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	331	333	first strand
Strand 2	C	339	341	anti-parallel
Strand 3	C	344	345	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	386	387	first strand
Strand 2	C	394	396	anti-parallel
Strand 3	C	409	411	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	276	278	first strand
Strand 2	D	283	285	anti-parallel
Strand 3	D	288	290	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	328	331	first strand
Strand 2	D	338	341	anti-parallel
Strand 3	D	348	350	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	395	397	first strand
Strand 2	D	402	404	anti-parallel
Strand 3	D	412	414	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9ZPD

Analysis of interatomic Contacts of Structural Units in PDB entry:
9ZPD