Analysis of interatomic Contacts of Structural Units in PDB entry:
9ZPN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9ZPN entry

There are 2 chains in PDB entry 9ZPN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 210GLN 480
B
 LYS 210GLU 481
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 9ZPN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
255 257Right-handed 310
Helix 2
AA2
A
258 275Right-handed alpha
Helix 3
AA3
A
308 317Right-handed alpha
Helix 4
AA4
A
320 341Right-handed alpha
Helix 5
AA5
A
369 375Right-handed 310
Helix 6
AA6
A
391 397Right-handed 310
Helix 7
AA7
A
400 418Right-handed alpha
Helix 8
AA8
A
427 436Right-handed alpha
Helix 9
AA9
A
441 447Right-handed 310
Helix 10
AB1
A
449 460Right-handed alpha
Helix 11
AB2
A
463 467Right-handed 310
Helix 12
AB3
A
469 475Right-handed alpha
Helix 13
AB4
A
476 480Right-handed 310
Helix 14
AB5
B
258 275Right-handed alpha
Helix 15
AB6
B
308 317Right-handed alpha
Helix 16
AB7
B
320 340Right-handed alpha
Helix 17
AB8
B
370 376Right-handed alpha
Helix 18
AB9
B
391 397Right-handed 310
Helix 19
AC1
B
401 418Right-handed alpha
Helix 20
AC2
B
427 436Right-handed alpha
Helix 21
AC3
B
441 447Right-handed 310
Helix 22
AC4
B
449 460Right-handed alpha
Helix 23
AC5
B
463 467Right-handed 310
Helix 24
AC6
B
469 476Right-handed alpha
Helix 25
AC7
B
477 480Right-handed 310
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There are 4 sheets in PDB entry 9ZPN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
211 214first strand
Strand 2
A
220 229anti-parallel
Strand 3
A
233 240anti-parallel
Strand 4
A
246 253anti-parallel
Strand 5
A
294 302anti-parallel
Strand 6
A
283 291anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
355 357first strand
Strand 2
A
364 366anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
381 382first strand
Strand 2
B
283 291anti-parallel
Strand 3
B
294 302anti-parallel
Strand 4
B
246 253anti-parallel
Strand 5
B
233 240anti-parallel
Strand 6
B
220 229anti-parallel
Strand 7
B
211 214anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
355 357first strand
Strand 2
B
364 366anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il