Analysis of interatomic Contacts of Structural Units in PDB entry:
9ZPU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9ZPU entry

There are 5 chains in PDB entry 9ZPU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 7	ARG 312
B	HIS 8	GLY 311
C	HIS 7	ARG 312
D	HIS 5	ILE 310
E	HIS 8	GLU 198

There are 79 helices in PDB entry 9ZPU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	45	57	Right-handed alpha
Helix 2	AA2	A	70	83	Right-handed alpha
Helix 3	AA3	A	118	123	Right-handed 310
Helix 4	AA4	A	126	130	Right-handed 310
Helix 5	AA5	A	131	137	Right-handed alpha
Helix 6	AA6	A	148	162	Right-handed alpha
Helix 7	AA7	A	179	185	Right-handed alpha
Helix 8	AA8	A	192	201	Right-handed alpha
Helix 9	AA9	A	206	219	Right-handed alpha
Helix 10	AB1	A	230	232	Right-handed 310
Helix 11	AB2	A	257	272	Right-handed alpha
Helix 12	AB3	A	275	293	Right-handed alpha
Helix 13	AB4	A	296	300	Right-handed 310
Helix 14	AB5	A	302	312	Right-handed alpha
Helix 15	AB6	B	45	57	Right-handed alpha
Helix 16	AB7	B	70	83	Right-handed alpha
Helix 17	AB8	B	117	123	Right-handed 310
Helix 18	AB9	B	126	130	Right-handed 310
Helix 19	AC1	B	131	138	Right-handed alpha
Helix 20	AC2	B	148	163	Right-handed alpha
Helix 21	AC3	B	179	185	Right-handed alpha
Helix 22	AC4	B	192	201	Right-handed alpha
Helix 23	AC5	B	206	219	Right-handed alpha
Helix 24	AC6	B	230	232	Right-handed 310
Helix 25	AC7	B	257	272	Right-handed alpha
Helix 26	AC8	B	275	292	Right-handed alpha
Helix 27	AC9	B	302	311	Right-handed alpha
Helix 28	AD1	C	45	57	Right-handed alpha
Helix 29	AD2	C	70	83	Right-handed alpha
Helix 30	AD3	C	117	123	Right-handed 310
Helix 31	AD4	C	125	130	Right-handed 310
Helix 32	AD5	C	131	138	Right-handed alpha
Helix 33	AD6	C	148	162	Right-handed alpha
Helix 34	AD7	C	179	185	Right-handed alpha
Helix 35	AD8	C	192	201	Right-handed alpha
Helix 36	AD9	C	206	219	Right-handed alpha
Helix 37	AE1	C	230	232	Right-handed 310
Helix 38	AE2	C	257	272	Right-handed alpha
Helix 39	AE3	C	275	292	Right-handed alpha
Helix 40	AE4	C	302	312	Right-handed alpha
Helix 41	AE5	D	45	57	Right-handed alpha
Helix 42	AE6	D	70	83	Right-handed alpha
Helix 43	AE7	D	118	123	Right-handed 310
Helix 44	AE8	D	126	130	Right-handed 310
Helix 45	AE9	D	131	137	Right-handed alpha
Helix 46	AF1	D	148	163	Right-handed alpha
Helix 47	AF2	D	179	186	Right-handed alpha
Helix 48	AF3	D	192	201	Right-handed alpha
Helix 49	AF4	D	206	219	Right-handed alpha
Helix 50	AF5	D	230	232	Right-handed 310
Helix 51	AF6	D	257	272	Right-handed alpha
Helix 52	AF7	D	275	292	Right-handed alpha
Helix 53	AF8	D	302	310	Right-handed alpha
Helix 54	AF9	E	45	57	Right-handed alpha
Helix 55	AG1	E	70	83	Right-handed alpha
Helix 56	AG2	E	118	123	Right-handed 310
Helix 57	AG3	E	124	130	Right-handed 310
Helix 58	AG4	E	131	137	Right-handed alpha
Helix 59	AG5	E	148	163	Right-handed alpha
Helix 60	AG6	E	179	184	Right-handed alpha
Helix 61	AG7	E	192	201	Right-handed alpha
Helix 62	AG8	E	206	219	Right-handed alpha
Helix 63	AG9	E	230	232	Right-handed 310
Helix 64	AH1	E	257	272	Right-handed alpha
Helix 65	AH2	E	275	292	Right-handed alpha
Helix 66	AH3	E	302	312	Right-handed alpha
Helix 67	AH4	F	45	57	Right-handed alpha
Helix 68	AH5	F	70	83	Right-handed alpha
Helix 69	AH6	F	118	123	Right-handed 310
Helix 70	AH7	F	125	130	Right-handed 310
Helix 71	AH8	F	131	138	Right-handed alpha
Helix 72	AH9	F	148	163	Right-handed alpha
Helix 73	AI1	F	179	185	Right-handed alpha
Helix 74	AI2	F	192	201	Right-handed alpha
Helix 75	AI3	F	206	219	Right-handed alpha
Helix 76	AI4	F	230	232	Right-handed 310
Helix 77	AI5	F	257	272	Right-handed alpha
Helix 78	AI6	F	275	293	Right-handed alpha
Helix 79	AI7	F	302	311	Right-handed alpha

There are 15 sheets in PDB entry 9ZPU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	93	first strand
Strand 2	A	61	68	parallel
Strand 3	A	10	13	parallel
Strand 4	A	140	143	parallel
Strand 5	A	166	168	parallel
Strand 6	A	188	189	parallel
Strand 7	A	224	228	parallel
Strand 8	A	234	238	anti-parallel
Strand 9	A	242	245	anti-parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	17	24	first strand
Strand 2	A	33	44	anti-parallel
Strand 3	D	111	116	parallel
Strand 4	D	99	105	anti-parallel
Strand 5	D	17	24	parallel
Strand 6	D	33	44	anti-parallel
Strand 7	A	111	116	parallel
Strand 8	A	99	106	anti-parallel
Strand 9	A	17	24	parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	61	64	first strand
Strand 2	B	10	13	parallel
Strand 3	B	140	143	parallel
Strand 4	B	166	168	parallel
Strand 5	B	188	189	parallel
Strand 6	B	224	228	parallel
Strand 7	B	234	238	anti-parallel
Strand 8	B	242	245	anti-parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	33	35	first strand
Strand 2	C	112	116	parallel
Strand 3	C	99	104	anti-parallel
Strand 4	C	17	24	parallel
Strand 5	C	33	44	anti-parallel
Strand 6	B	111	116	parallel
Strand 7	B	99	105	anti-parallel
Strand 8	B	17	23	parallel
Strand 9	B	38	44	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	68	first strand
Strand 2	B	91	93	parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	61	64	first strand
Strand 2	C	10	13	parallel
Strand 3	C	140	143	parallel
Strand 4	C	166	168	parallel
Strand 5	C	188	189	parallel
Strand 6	C	224	228	parallel
Strand 7	C	234	238	anti-parallel
Strand 8	C	242	245	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	66	68	first strand
Strand 2	C	91	93	parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	61	64	first strand
Strand 2	D	10	13	parallel
Strand 3	D	140	143	parallel
Strand 4	D	165	168	parallel
Strand 5	D	188	189	parallel
Strand 6	D	224	228	parallel
Strand 7	D	234	238	anti-parallel
Strand 8	D	241	245	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	66	68	first strand
Strand 2	D	91	93	parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	61	64	first strand
Strand 2	E	10	13	parallel
Strand 3	E	140	143	parallel
Strand 4	E	165	168	parallel
Strand 5	E	188	189	parallel
Strand 6	E	224	228	parallel
Strand 7	E	234	238	anti-parallel
Strand 8	E	242	245	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	38	44	first strand
Strand 2	E	17	23	anti-parallel
Strand 3	E	100	105	parallel
Strand 4	E	111	116	anti-parallel
Strand 5	F	33	36	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	33	36	first strand
Strand 2	F	113	116	parallel
Strand 3	F	100	106	anti-parallel
Strand 4	F	17	24	parallel
Strand 5	F	38	44	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	66	68	first strand
Strand 2	E	91	93	parallel

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There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	61	64	first strand
Strand 2	F	10	13	parallel
Strand 3	F	140	143	parallel
Strand 4	F	166	168	parallel
Strand 5	F	188	189	parallel
Strand 6	F	224	228	parallel
Strand 7	F	234	238	anti-parallel
Strand 8	F	242	245	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	66	68	first strand
Strand 2	F	91	93	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9ZPU

Analysis of interatomic Contacts of Structural Units in PDB entry:
9ZPU