Analysis of interatomic Contacts of Structural Units in PDB entry:
9ZQB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9ZQB entry

There are 14 chains in PDB entry 9ZQB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 12	LYS 119
B	LYS 11	LYS 119
C	LYS 27	LYS 124
D	LYS 27	LYS 124
E	LYS 37	ALA 136
F	LYS 38	ALA 136
G	ARG 19	GLY 104
H	ARG 19	GLY 104
I	ALA 23	SER 273
J	ALA 23	SER 273
K	A 1	C 47
L	C 1	T 106
M	A 1	T 153
P	LYS 91	TYR 208

There are 47 helices in PDB entry 9ZQB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	16	22	Right-handed alpha
Helix 2	AA2	A	26	36	Right-handed alpha
Helix 3	AA3	A	45	73	Right-handed alpha
Helix 4	AA4	A	79	89	Right-handed alpha
Helix 5	AA5	A	90	97	Right-handed alpha
Helix 6	AA6	A	112	116	Right-handed 310
Helix 7	AA7	B	16	22	Right-handed alpha
Helix 8	AA8	B	26	37	Right-handed alpha
Helix 9	AA9	B	45	73	Right-handed alpha
Helix 10	AB1	B	79	89	Right-handed alpha
Helix 11	AB2	B	90	97	Right-handed alpha
Helix 12	AB3	B	112	116	Right-handed 310
Helix 13	AB4	C	36	48	Right-handed alpha
Helix 14	AB5	C	54	83	Right-handed alpha
Helix 15	AB6	C	89	101	Right-handed alpha
Helix 16	AB7	C	102	123	Right-handed alpha
Helix 17	AB8	D	36	48	Right-handed alpha
Helix 18	AB9	D	54	83	Right-handed alpha
Helix 19	AC1	D	89	101	Right-handed alpha
Helix 20	AC2	D	102	123	Right-handed alpha
Helix 21	AC3	E	45	58	Right-handed alpha
Helix 22	AC4	E	64	78	Right-handed alpha
Helix 23	AC5	E	86	115	Right-handed alpha
Helix 24	AC6	E	121	133	Right-handed alpha
Helix 25	AC7	F	45	58	Right-handed alpha
Helix 26	AC8	F	64	77	Right-handed alpha
Helix 27	AC9	F	86	115	Right-handed alpha
Helix 28	AD1	F	121	132	Right-handed alpha
Helix 29	AD2	G	26	31	Right-handed 310
Helix 30	AD3	G	32	43	Right-handed alpha
Helix 31	AD4	G	51	78	Right-handed alpha
Helix 32	AD5	G	84	95	Right-handed alpha
Helix 33	AD6	H	26	31	Right-handed 310
Helix 34	AD7	H	32	43	Right-handed alpha
Helix 35	AD8	H	51	78	Right-handed alpha
Helix 36	AD9	H	84	95	Right-handed alpha
Helix 37	AE1	I	103	107	Right-handed 310
Helix 38	AE2	I	182	184	Right-handed 310
Helix 39	AE3	I	216	219	Right-handed 310
Helix 40	AE4	I	241	245	Right-handed 310
Helix 41	AE5	J	103	107	Right-handed 310
Helix 42	AE6	J	182	184	Right-handed 310
Helix 43	AE7	J	228	230	Right-handed 310
Helix 44	AE8	J	241	245	Right-handed 310
Helix 45	AE9	P	124	127	Right-handed 310
Helix 46	AF1	P	168	185	Right-handed alpha
Helix 47	AF2	P	187	194	Right-handed 310

There are 26 sheets in PDB entry 9ZQB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	43	first strand
Strand 2	C	87	88	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	77	78	first strand
Strand 2	C	52	53	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	101	102	first strand
Strand 2	G	99	100	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	42	43	first strand
Strand 2	D	87	88	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	77	78	first strand
Strand 2	D	52	53	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	102	first strand
Strand 2	H	98	100	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	84	85	first strand
Strand 2	G	82	83	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	119	120	first strand
Strand 2	G	47	48	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	84	85	first strand
Strand 2	H	82	83	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	119	120	first strand
Strand 2	H	47	48	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	28	31	first strand
Strand 2	I	43	49	anti-parallel
Strand 3	I	94	99	anti-parallel
Strand 4	I	86	91	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	34	37	first strand
Strand 2	I	126	130	parallel
Strand 3	I	108	114	anti-parallel
Strand 4	I	57	62	anti-parallel
Strand 5	I	69	72	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	34	37	first strand
Strand 2	I	126	130	parallel
Strand 3	I	108	114	anti-parallel
Strand 4	I	121	122	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	157	160	first strand
Strand 2	I	176	179	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	164	166	first strand
Strand 2	I	268	272	parallel
Strand 3	I	246	254	anti-parallel
Strand 4	I	186	194	anti-parallel
Strand 5	I	198	205	anti-parallel
Strand 6	I	212	214	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	164	166	first strand
Strand 2	I	268	272	parallel
Strand 3	I	246	254	anti-parallel
Strand 4	I	263	264	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	172	174	first strand
Strand 2	I	232	237	anti-parallel
Strand 3	I	222	227	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	28	31	first strand
Strand 2	J	43	49	anti-parallel
Strand 3	J	94	99	anti-parallel
Strand 4	J	86	91	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	34	38	first strand
Strand 2	J	126	131	parallel
Strand 3	J	108	114	anti-parallel
Strand 4	J	57	62	anti-parallel
Strand 5	J	69	73	anti-parallel
Strand 6	J	77	78	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	34	38	first strand
Strand 2	J	126	131	parallel
Strand 3	J	108	114	anti-parallel
Strand 4	J	121	122	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	157	160	first strand
Strand 2	J	172	179	anti-parallel
Strand 3	J	232	237	anti-parallel
Strand 4	J	222	227	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	164	166	first strand
Strand 2	J	268	272	parallel
Strand 3	J	246	254	anti-parallel
Strand 4	J	186	193	anti-parallel
Strand 5	J	200	205	anti-parallel
Strand 6	J	212	214	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	164	166	first strand
Strand 2	J	268	272	parallel
Strand 3	J	246	254	anti-parallel
Strand 4	J	263	264	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	105	107	first strand
Strand 2	P	128	139	anti-parallel
Strand 3	P	145	153	anti-parallel
Strand 4	P	160	166	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	105	107	first strand
Strand 2	P	128	139	anti-parallel
Strand 3	P	116	123	anti-parallel
Strand 4	P	202	203	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	109	110	first strand
Strand 2	P	113	114	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9ZQB

Analysis of interatomic Contacts of Structural Units in PDB entry:
9ZQB